Resource

Id DNase-seq/ENCSR516JCMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR516JCM [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours"]
Description
Labels
  • accession: ENCSR516JCM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours
  • date_created: 2018-11-30T18:43:55.273538+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR516JCM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (37 years) treated with 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours
  • status: released
  • submitter_comment: The experiment biosample had no prior associated treatments. Treatments anti-CD3 and anti-CD28 coated beads for 16 hours & 50 U/mL Interleukin-2 (UniProtKB:P60568) for 16 hours have been added to the biosample on 11/04/21.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR516JCM float

DNase-seq_ENCSR516JCM
DNase-seq ENCSR516JCM [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR516JCM [0.0682, 25.9]
n
22,431,450
mean
2.25
sd
3.05

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 224314500.70% 116056
chr1 2155747 0.87% 11170
chr2 1771989 0.73% 9162
chr3 1459174 0.74% 7587
chr4 980723 0.52% 5129
chr5 1122676 0.62% 5856
chr6 1465150 0.86% 7442
chr7 1071850 0.67% 5599
chr8 989950 0.68% 5133
chr9 903211 0.65% 4703
chr10 1068643 0.80% 5548
chr11 1075938 0.80% 5590
chr12 1144178 0.86% 5897
chr13 520128 0.45% 2695
chr14 773405 0.72% 3968
chr15 735186 0.72% 3824
chr16 781240 0.86% 4006
chr17 1081388 1.30% 5486
chr18 431485 0.54% 2285
chr19 916460 1.56% 4616
chr20 572120 0.89% 2980
chr21 256355 0.55% 1332
chr22 430230 0.85% 2224
chrX 724121 0.46% 3823
chrY 103 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 116056 1 980 193.28 194
global segment-length histogram

Files

Filename Size md5
ENCFF687BZO.bed.gz 1.24 MB 13135a945b40fdca7f2f031d89f077e4
ENCFF687BZO.tabix.bed.gz 1.14 MB ad3dcb74a1efc084d008f29ac8a9e704
ENCFF687BZO.tabix.bed.gz.tbi 447.3 KB 1a8e6b6f0b4283965e3193fad8186773
genomic_resource.yaml 2.02 KB c4edd1b34d227277cfc2e180b6c09bee
statistics/