| Id: | DNase-seq/ENCSR515PDV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR515PDV [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (50 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (50 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF030PNE|/files/ENCFF030PNE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR515PDV | float |
DNase-seq_ENCSR515PDV |
DNase-seq ENCSR515PDV [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (50 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"]
|
 |
[0.0502, 21.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF092DWH.bed.gz | 802.95 KB | 63f4ff7e294de6a26afd70bd82a89673 |
| ENCFF092DWH.bed.gz.dvc | 100.0 B | 9c3c18a056523f1e47d6554650d12be8 |
| ENCFF092DWH.tabix.bed.gz | 748.16 KB | 37aa336d8e30514556c61bc178118185 |
| ENCFF092DWH.tabix.bed.gz.dvc | 106.0 B | 6ee5574ca79df308834e4c81863cb646 |
| ENCFF092DWH.tabix.bed.gz.tbi | 197.86 KB | 929b979f2887c8cfe0346287dee31f61 |
| ENCFF092DWH.tabix.bed.gz.tbi.dvc | 110.0 B | 5fc9ef91200d216dc2328b2caf0d1884 |
| genomic_resource.yaml | 2.61 KB | e71fd2a27ec406d0a4fba5f9031c37fb |
| genomic_resource_original.yaml | 2.39 KB | f0f07f13e863dab8346af866eeedf39f |
| statistics/ |