Resource

Id DNase-seq/ENCSR515EWIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR515EWI [biosample_summary="Homo sapiens Caki2"]
Description
Labels
  • accession: ENCSR515EWI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002150/
  • biosample_summary: Homo sapiens Caki2
  • date_created: 2014-06-20T22:01:10.119420+00:00
  • date_released: 2015-08-18
  • doi: 10.17989/ENCSR515EWI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR515EWI float

DNase-seq_ENCSR515EWI

DNase-seq ENCSR515EWI [biosample_summary="Homo sapiens Caki2"]
HISTOGRAM FOR DNase-seq_ENCSR515EWI [1, 150]
n
17,758,200
mean
43
sd
31.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 177582000.55% 127307
chr1 1557380 0.63% 11119
chr2 1463870 0.60% 10552
chr3 1089090 0.55% 7720
chr4 868930 0.46% 6221
chr5 933640 0.51% 6620
chr6 1145320 0.67% 8207
chr7 964150 0.61% 7009
chr8 815800 0.56% 5815
chr9 693310 0.50% 4941
chr10 922390 0.69% 6653
chr11 751590 0.56% 5322
chr12 970980 0.73% 6955
chr13 386370 0.34% 2750
chr14 488450 0.46% 3481
chr15 566530 0.56% 4066
chr16 663360 0.73% 4824
chr17 814160 0.98% 5877
chr18 306860 0.38% 2184
chr19 723790 1.23% 5259
chr20 522350 0.81% 3781
chr21 222580 0.48% 1599
chr22 398670 0.78% 2882
chrX 465060 0.30% 3291
chrY 23570 0.04% 179
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 127307 10 370 139.49 150
global segment-length histogram

Files

Filename Size md5
ENCFF860PPF.bed.gz 1.08 MB af2deacfe31b085902a71e9d67ac49b6
ENCFF860PPF.tabix.bed.gz 1.0 MB 0aa24b2106eac0e6a71b3258ca40b1f4
ENCFF860PPF.tabix.bed.gz.tbi 462.0 KB c89c2422257c6d6c5f2a44b7bde28de9
genomic_resource.yaml 1.25 KB 115f9b05bbf007b8d0611bcaa5a58c49
statistics/