Resource

Id DNase-seq/ENCSR514QHNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR514QHN [biosample_summary="Homo sapiens muscle of leg tissue male embryo (105 days)"]
Description
Labels
  • accession: ENCSR514QHN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001383/
  • biosample_summary: Homo sapiens muscle of leg tissue male embryo (105 days)
  • date_created: 2015-09-16T21:42:37.229482+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR514QHN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR514QHN float

DNase-seq_ENCSR514QHN
DNase-seq ENCSR514QHN [biosample_summary="Homo sapiens muscle of leg tissue male embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR514QHN [3, 1.38e+03]
n
13,254,920
mean
44.3
sd
39.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 132549200.41% 87839
chr1 1157227 0.46% 7681
chr2 1089784 0.45% 7217
chr3 900264 0.45% 5956
chr4 727300 0.38% 4812
chr5 795868 0.44% 5267
chr6 857881 0.50% 5686
chr7 653666 0.41% 4336
chr8 660585 0.46% 4365
chr9 563411 0.41% 3739
chr10 675539 0.50% 4481
chr11 652748 0.48% 4326
chr12 653379 0.49% 4332
chr13 409104 0.36% 2704
chr14 424037 0.40% 2814
chr15 414661 0.41% 2745
chr16 375023 0.42% 2487
chr17 481545 0.58% 3195
chr18 316729 0.39% 2103
chr19 393643 0.67% 2615
chr20 310027 0.48% 2057
chr21 164827 0.35% 1090
chr22 193791 0.38% 1288
chrX 366781 0.24% 2429
chrY 17100 0.03% 114
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 87839 3 598 150.9 150
global segment-length histogram

Files

Filename Size md5
ENCFF020LII.bed.gz 841.86 KB 4eefdb66702e26312297cc87c7ff2fc1
ENCFF020LII.tabix.bed.gz 721.87 KB c8884578f50e6e7e8b1d4cb3d92e943f
ENCFF020LII.tabix.bed.gz.tbi 379.9 KB f1848d2424db9f1d46429167babc8f91
genomic_resource.yaml 1.4 KB 347c2ae57f2d39307790893e3d9fdaf8
statistics/