DNase-seq_ENCSR512CWR
DNase-seq ENCSR512CWR [biosample_summary="Homo sapiens umbilical cord tissue embryo (59 days) and male embryo (76 days)"]
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| Id: | DNase-seq/ENCSR512CWR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR512CWR [biosample_summary="Homo sapiens umbilical cord tissue embryo (59 days) and male embryo (76 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: embryo (59 days) male embryo (76 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF504SRC|/files/ENCFF504SRC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR512CWR | float |
DNase-seq_ENCSR512CWR |
DNase-seq ENCSR512CWR [biosample_summary="Homo sapiens umbilical cord tissue embryo (59 days) and male embryo (76 days)"]
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[0.0284, 16.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF716MEI.bed.gz | 2.47 MB | 1d8945b348a4df3e3ebe89ae1f7df889 |
| ENCFF716MEI.bed.gz.dvc | 101.0 B | 9f294e2a57c10d3b03229b1851a2b268 |
| ENCFF716MEI.tabix.bed.gz | 2.27 MB | 34f3fbb8744905177bf150a84e91612f |
| ENCFF716MEI.tabix.bed.gz.dvc | 107.0 B | 7407809332c8c4d7ffd5a7baea7402cd |
| ENCFF716MEI.tabix.bed.gz.tbi | 704.1 KB | 1442b78c2f7395a7d908ed70f0bc139c |
| ENCFF716MEI.tabix.bed.gz.tbi.dvc | 110.0 B | ec38516507b59b349b85fc19f181e3e3 |
| genomic_resource.yaml | 2.14 KB | 8718ef43f8fc36608b20648b88df2cbb |
| genomic_resource_original.yaml | 2.02 KB | 97358dbef02feb4719246a088e3ad317 |
| statistics/ |