DNase-seq_ENCSR510GRY
DNase-seq ENCSR510GRY [biosample_summary="Homo sapiens posterior cingulate gyrus tissue male adult (83 years)"]
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| Id: | DNase-seq/ENCSR510GRY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR510GRY [biosample_summary="Homo sapiens posterior cingulate gyrus tissue male adult (83 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (83 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF567DIU|/files/ENCFF567DIU/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR510GRY | float |
DNase-seq_ENCSR510GRY |
DNase-seq ENCSR510GRY [biosample_summary="Homo sapiens posterior cingulate gyrus tissue male adult (83 years)"]
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[0.088, 12.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF374LXL.bed.gz | 464.91 KB | 3c41731a4190a1c9b8bd2e08555b1ad7 |
| ENCFF374LXL.bed.gz.dvc | 100.0 B | f91fa3fd40800ae5ac0ecb16e65b2e9b |
| ENCFF374LXL.tabix.bed.gz | 421.49 KB | 3887b2fc6e72b7024edb889737fe9a51 |
| ENCFF374LXL.tabix.bed.gz.dvc | 106.0 B | ec238157115d6fedad8527847761f84e |
| ENCFF374LXL.tabix.bed.gz.tbi | 205.5 KB | 0ac1b623283a60e7514cc87d152a6b7f |
| ENCFF374LXL.tabix.bed.gz.tbi.dvc | 110.0 B | fbae2d64f0589b16ee3ffd5b696840a1 |
| genomic_resource.yaml | 2.07 KB | 39a23cb49ce340739310c2d6e1321b4f |
| genomic_resource_original.yaml | 1.96 KB | f7924259373e9ca47a1354792efa72ba |
| statistics/ |