Resource

Id DNase-seq/ENCSR508FVMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR508FVM [biosample_summary="Homo sapiens tibial nerve tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR508FVM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001323/
  • biosample_summary: Homo sapiens tibial nerve tissue male adult (54 years)
  • date_created: 2019-10-08T17:48:09.312209+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR508FVM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR508FVM float

DNase-seq_ENCSR508FVM
DNase-seq ENCSR508FVM [biosample_summary="Homo sapiens tibial nerve tissue male adult (54 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR508FVM [0.117, 31.8]
n
8,359,627
mean
2.87
sd
2.79

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 83596270.26% 47300
chr1 797975 0.32% 4478
chr2 661574 0.27% 3781
chr3 455092 0.23% 2576
chr4 310524 0.16% 1798
chr5 368091 0.20% 2137
chr6 393123 0.23% 2240
chr7 386210 0.24% 2235
chr8 332154 0.23% 1916
chr9 381773 0.28% 2139
chr10 375597 0.28% 2199
chr11 511266 0.38% 2857
chr12 411804 0.31% 2358
chr13 175525 0.15% 986
chr14 274947 0.26% 1539
chr15 265635 0.26% 1547
chr16 312160 0.35% 1737
chr17 496185 0.60% 2732
chr18 150039 0.19% 850
chr19 476485 0.81% 2530
chr20 239867 0.37% 1370
chr21 125522 0.27% 710
chr22 248024 0.49% 1392
chrX 203643 0.13% 1155
chrY 6412 0.01% 38
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47300 1 700 176.74 180
global segment-length histogram

Files

Filename Size md5
ENCFF100ITH.bed.gz 525.05 KB f70328028dbdd186396bac25af4962fc
ENCFF100ITH.tabix.bed.gz 476.02 KB fc9cc2745008f36e2b62930289449c2c
ENCFF100ITH.tabix.bed.gz.tbi 227.54 KB 11a3e5cbe0285e1c0d0e0e70ecd200ed
genomic_resource.yaml 2.03 KB ae307d3e6f94d083c424825f48d4c3fc
statistics/