DNase-seq_ENCSR508FVM
DNase-seq ENCSR508FVM [biosample_summary="Homo sapiens tibial nerve tissue male adult (54 years)"]
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| Id: | DNase-seq/ENCSR508FVM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR508FVM [biosample_summary="Homo sapiens tibial nerve tissue male adult (54 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF647TLU|/files/ENCFF647TLU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR508FVM | float |
DNase-seq_ENCSR508FVM |
DNase-seq ENCSR508FVM [biosample_summary="Homo sapiens tibial nerve tissue male adult (54 years)"]
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[0.117, 31.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF100ITH.bed.gz | 525.05 KB | f70328028dbdd186396bac25af4962fc |
| ENCFF100ITH.bed.gz.dvc | 100.0 B | 4f8965b4843961aee66873138f7a7a4f |
| ENCFF100ITH.tabix.bed.gz | 476.02 KB | fc9cc2745008f36e2b62930289449c2c |
| ENCFF100ITH.tabix.bed.gz.dvc | 106.0 B | 644e1fb18bfd09a7c4b0ecabc2a0faf0 |
| ENCFF100ITH.tabix.bed.gz.tbi | 227.54 KB | 11a3e5cbe0285e1c0d0e0e70ecd200ed |
| ENCFF100ITH.tabix.bed.gz.tbi.dvc | 110.0 B | a45febf5dbd4479660b196c977665ee1 |
| genomic_resource.yaml | 2.03 KB | ae307d3e6f94d083c424825f48d4c3fc |
| genomic_resource_original.yaml | 1.93 KB | bb426d1ca8586424471b1ebe0b89be1d |
| statistics/ |