Resource

Id DNase-seq/ENCSR507XBYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR507XBY [biosample_summary="Homo sapiens T-cell male adult (19 years)"]
Description
Labels
  • accession: ENCSR507XBY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (19 years)
  • date_created: 2020-04-12T19:00:09.443401+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR507XBY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (19 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR507XBY float

DNase-seq_ENCSR507XBY

DNase-seq ENCSR507XBY [biosample_summary="Homo sapiens T-cell male adult (19 years)"]
HISTOGRAM FOR DNase-seq_ENCSR507XBY [0.154, 109]
n
10,316,595
mean
8.07
sd
11.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 103165950.32% 57085
chr1 1027399 0.41% 5659
chr2 718181 0.30% 3989
chr3 563079 0.28% 3112
chr4 358676 0.19% 1995
chr5 459634 0.25% 2551
chr6 609256 0.36% 3374
chr7 474329 0.30% 2657
chr8 383583 0.26% 2150
chr9 407341 0.29% 2264
chr10 467621 0.35% 2587
chr11 530295 0.39% 2953
chr12 522451 0.39% 2893
chr13 214286 0.19% 1180
chr14 365380 0.34% 2021
chr15 327135 0.32% 1843
chr16 423339 0.47% 2319
chr17 629204 0.76% 3431
chr18 171679 0.21% 971
chr19 660858 1.13% 3537
chr20 303112 0.47% 1712
chr21 128034 0.27% 709
chr22 255916 0.50% 1416
chrX 303289 0.19% 1694
chrY 12518 0.02% 68
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 57085 3 640 180.72 180
global segment-length histogram

Files

Filename Size md5
ENCFF478ZZJ.bed.gz 643.25 KB f4462e556be8013b7b7ac5a9b6606c88
ENCFF478ZZJ.tabix.bed.gz 585.28 KB 557ffcbac0ad81f196bde83c917ab188
ENCFF478ZZJ.tabix.bed.gz.tbi 257.32 KB bc9de40a11a42b1bc9f814dba31984d2
genomic_resource.yaml 1.18 KB 74ffc98fbf60abc10d9dc80459198b47
statistics/