Resource

Id DNase-seq/ENCSR507GFJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR507GFJ [biosample_summary="Homo sapiens brain tissue embryo (80 days)"]
Description
Labels
  • accession: ENCSR507GFJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000955/
  • biosample_summary: Homo sapiens brain tissue embryo (80 days)
  • date_created: 2015-06-30T18:00:47.019718+00:00
  • date_released: 2018-05-09
  • doi: 10.17989/ENCSR507GFJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (80 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR507GFJ float

DNase-seq_ENCSR507GFJ
DNase-seq ENCSR507GFJ [biosample_summary="Homo sapiens brain tissue embryo (80 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR507GFJ [1, 6.46e+04]
n
43,457,326
mean
202
sd
424

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 434573261.35% 289040
chr1 3695653 1.48% 24597
chr2 3641191 1.50% 24197
chr3 2865508 1.45% 19046
chr4 2418382 1.27% 16081
chr5 2624027 1.45% 17447
chr6 2590706 1.52% 17233
chr7 2312333 1.45% 15375
chr8 2155236 1.48% 14326
chr9 1810225 1.31% 12047
chr10 2169835 1.62% 14425
chr11 2130167 1.58% 14169
chr12 2037597 1.53% 13551
chr13 1392720 1.22% 9265
chr14 1415095 1.32% 9407
chr15 1363482 1.34% 9069
chr16 1396359 1.55% 9293
chr17 1565170 1.88% 10419
chr18 1153109 1.43% 7679
chr19 1028889 1.76% 6843
chr20 1129721 1.75% 7524
chr21 513720 1.10% 3415
chr22 709629 1.40% 4728
chrX 1320872 0.85% 8786
chrY 17700 0.03% 118
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 289040 2 450 150.35 150
global segment-length histogram

Files

Filename Size md5
ENCFF205KSG.bed.gz 2.74 MB 52fc7d9dbd63085aad6e35109cadc774
ENCFF205KSG.tabix.bed.gz 2.37 MB 14ddee5d099a449ff6ff7986a1ff8257
ENCFF205KSG.tabix.bed.gz.tbi 801.74 KB 044d8c1a150ffe2c354306e63cd85f4f
genomic_resource.yaml 1.35 KB 4a08b79e3536efef4e0b7d92a5f363f8
statistics/