Resource

Id DNase-seq/ENCSR506QJJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR506QJJ [biosample_summary="Homo sapiens SJCRH30"]
Description
Labels
  • accession: ENCSR506QJJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005722/
  • biosample_summary: Homo sapiens SJCRH30
  • date_created: 2019-09-14T19:53:53.804753+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR506QJJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR506QJJ float

DNase-seq_ENCSR506QJJ

DNase-seq ENCSR506QJJ [biosample_summary="Homo sapiens SJCRH30"]
HISTOGRAM FOR DNase-seq_ENCSR506QJJ [0.0546, 380]
n
27,170,369
mean
2.48
sd
4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 271703690.84% 141359
chr1 2629906 1.06% 13523
chr2 2214805 0.91% 11635
chr3 1523050 0.77% 8084
chr4 1263736 0.66% 6738
chr5 1356936 0.75% 7222
chr6 1491722 0.87% 7841
chr7 1371041 0.86% 7197
chr8 1018560 0.70% 5434
chr9 1341813 0.97% 6933
chr10 1208513 0.90% 6314
chr11 1327017 0.98% 6856
chr12 1391447 1.04% 7160
chr13 677239 0.59% 3621
chr14 876220 0.82% 4571
chr15 937953 0.92% 4838
chr16 968651 1.07% 4922
chr17 1401581 1.68% 7049
chr18 441620 0.55% 2360
chr19 1101251 1.88% 5489
chr20 865947 1.34% 4404
chr21 314942 0.67% 1669
chr22 598808 1.18% 3015
chrX 839668 0.54% 4434
chrY 7943 0.01% 50
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 141359 1 860 192.21 180
global segment-length histogram

Files

Filename Size md5
ENCFF993DGY.bed.gz 1.52 MB bdecdc846cdbc613b27a4db4a3eb7d42
ENCFF993DGY.tabix.bed.gz 1.39 MB 92a08de57af18d3de527633fc8b1debe
ENCFF993DGY.tabix.bed.gz.tbi 506.57 KB 74fed85a8727b60269e524f3952f25bf
genomic_resource.yaml 1.07 KB 58e38cb746f345a5d12083055b597c24
statistics/