DNase-seq_ENCSR503UFM
DNase-seq ENCSR503UFM [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (77 years)"]
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| Id: | DNase-seq/ENCSR503UFM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR503UFM [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (77 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (77 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF223HZW|/files/ENCFF223HZW/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR503UFM | float |
DNase-seq_ENCSR503UFM |
DNase-seq ENCSR503UFM [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (77 years)"]
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[0.059, 17.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF782XPH.bed.gz | 877.99 KB | 77a35780f89abb16c33e18b565aa6f35 |
| ENCFF782XPH.bed.gz.dvc | 100.0 B | d93d1bece8432bf05b33d4193197514e |
| ENCFF782XPH.tabix.bed.gz | 794.23 KB | 858aed9b1b16f736c3f42eb071e6e4a7 |
| ENCFF782XPH.tabix.bed.gz.dvc | 106.0 B | aad758d155eb6a9c2dbe8b71649b914e |
| ENCFF782XPH.tabix.bed.gz.tbi | 326.19 KB | d2efc8d3b27c15728e4640615a151304 |
| ENCFF782XPH.tabix.bed.gz.tbi.dvc | 110.0 B | 2ce97a1ad651db3f83fdecf91e66507d |
| genomic_resource.yaml | 2.08 KB | dfcfd553069892f095e9100dbe53833c |
| genomic_resource_original.yaml | 1.96 KB | 0aa6bfbde071ce32ced33e8fc31b0366 |
| statistics/ |