DNase-seq_ENCSR503HIB
DNase-seq ENCSR503HIB [biosample_summary="Homo sapiens cerebellar cortex tissue male adult (78 years) and male adult (84 years)"]
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| Id: | DNase-seq/ENCSR503HIB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR503HIB [biosample_summary="Homo sapiens cerebellar cortex tissue male adult (78 years) and male adult (84 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (84 years) male adult (78 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF529PQJ|/files/ENCFF529PQJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR503HIB | float |
DNase-seq_ENCSR503HIB |
DNase-seq ENCSR503HIB [biosample_summary="Homo sapiens cerebellar cortex tissue male adult (78 years) and male adult (84 years)"]
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[0.0304, 26.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF219JBP.bed.gz | 1.66 MB | 920acc0cbac1f6b26d127ca3915d8f14 |
| ENCFF219JBP.bed.gz.dvc | 101.0 B | 6aa49bb278fd94efd75e102d44bee195 |
| ENCFF219JBP.tabix.bed.gz | 1.54 MB | 620599c9558e581fbce030f58b85e18f |
| ENCFF219JBP.tabix.bed.gz.dvc | 107.0 B | 77731bf3c99ea2904955a9828e635e59 |
| ENCFF219JBP.tabix.bed.gz.tbi | 508.25 KB | 53e1d6e055830c48bbe3208a9a3fd059 |
| ENCFF219JBP.tabix.bed.gz.tbi.dvc | 110.0 B | 067aff79cc3c4b9fa25cd740c82651fb |
| genomic_resource.yaml | 2.17 KB | ce667dd65922bb3efe5749024f242b33 |
| genomic_resource_original.yaml | 2.04 KB | da1f596c237669bd6db4d574321d0d5e |
| statistics/ |