DNase-seq_ENCSR503BEM
DNase-seq ENCSR503BEM [biosample_summary="Homo sapiens LoVo"]
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| Id: | DNase-seq/ENCSR503BEM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR503BEM [biosample_summary="Homo sapiens LoVo"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN997SWP|/analyses/ENCAN997SWP/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF615YBI|/files/ENCFF615YBI/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF478GDA|/files/ENCFF478GDA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR503BEM | float |
DNase-seq_ENCSR503BEM |
DNase-seq ENCSR503BEM [biosample_summary="Homo sapiens LoVo"]
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[6, 9.89e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF586BVY.bed.gz | 1.41 MB | a02afd7244be2411051dad2609db5799 |
| ENCFF586BVY.bed.gz.dvc | 101.0 B | 5bc4c31dd1579f6f30a0d75c147ac201 |
| ENCFF586BVY.tabix.bed.gz | 1.22 MB | ebfc716efd014fae1c3c94b034fcc975 |
| ENCFF586BVY.tabix.bed.gz.dvc | 107.0 B | e0ee15a5a6b5e628bd2ec10d3fee55f0 |
| ENCFF586BVY.tabix.bed.gz.tbi | 521.28 KB | cfc320139da4fe0ef85e892fc2faf140 |
| ENCFF586BVY.tabix.bed.gz.tbi.dvc | 110.0 B | 4f16742f457241f71be7885c408a9d9d |
| genomic_resource.yaml | 2.91 KB | d01d96c51e9de0aeca051e31ad4250b9 |
| genomic_resource_original.yaml | 2.84 KB | 440b047ef09b2ca8e7496cf1857e039f |
| statistics/ |