| Id: | DNase-seq/ENCSR502GWQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR502GWQ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF325HML|/files/ENCFF325HML/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27526238 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR502GWQ | float |
DNase-seq_ENCSR502GWQ |
DNase-seq ENCSR502GWQ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour"]
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 |
[0.437, 58.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF741XNE.bed.gz | 400.84 KB | 121e2eb194ea07be2f257a5ab15677cc |
| ENCFF741XNE.bed.gz.dvc | 100.0 B | f5abaa24c1cda4dd70c7c9af9805907b |
| ENCFF741XNE.tabix.bed.gz | 362.23 KB | 12bfbe74168ec8bf8a6ec60d0e97d16a |
| ENCFF741XNE.tabix.bed.gz.dvc | 106.0 B | 77c2f28be1b252dcbf1fbc8b06bab945 |
| ENCFF741XNE.tabix.bed.gz.tbi | 193.25 KB | 295c1f36fa2a36c08e9716270a462bd1 |
| ENCFF741XNE.tabix.bed.gz.tbi.dvc | 110.0 B | 4455454e1db3c8219da56298c1dde534 |
| genomic_resource.yaml | 2.44 KB | 52aa8df4affcec11e0fb5d3a83e33a29 |
| genomic_resource_original.yaml | 2.21 KB | 1a427329ab328bda790d6854289e0fab |
| statistics/ |