Resource

Id DNase-seq/ENCSR502GWQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR502GWQ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour"]
Description
Labels
  • accession: ENCSR502GWQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour
  • date_created: 2020-04-20T23:45:32.213117+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR502GWQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR502GWQ float

DNase-seq_ENCSR502GWQ
DNase-seq ENCSR502GWQ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR502GWQ [0.437, 58.6]
n
6,583,573
mean
7.8
sd
8.01

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 65835730.20% 36383
chr1 675774 0.27% 3751
chr2 445520 0.18% 2464
chr3 361072 0.18% 1994
chr4 225874 0.12% 1250
chr5 284527 0.16% 1583
chr6 374200 0.22% 2072
chr7 307253 0.19% 1697
chr8 233197 0.16% 1317
chr9 268459 0.19% 1496
chr10 279973 0.21% 1562
chr11 335056 0.25% 1865
chr12 341901 0.26% 1879
chr13 130159 0.11% 704
chr14 229921 0.21% 1262
chr15 218403 0.21% 1213
chr16 273539 0.30% 1530
chr17 416768 0.50% 2268
chr18 100146 0.12% 546
chr19 476788 0.81% 2544
chr20 184794 0.29% 1058
chr21 75940 0.16% 422
chr22 161712 0.32% 908
chrX 175595 0.11% 961
chrY 7002 0.01% 37
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36383 20 900 180.95 180
global segment-length histogram

Files

Filename Size md5
ENCFF741XNE.bed.gz 400.84 KB 121e2eb194ea07be2f257a5ab15677cc
ENCFF741XNE.tabix.bed.gz 362.23 KB 12bfbe74168ec8bf8a6ec60d0e97d16a
ENCFF741XNE.tabix.bed.gz.tbi 193.25 KB 295c1f36fa2a36c08e9716270a462bd1
genomic_resource.yaml 2.44 KB 52aa8df4affcec11e0fb5d3a83e33a29
statistics/