DNase-seq_ENCSR502FPR
DNase-seq ENCSR502FPR [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR502FPR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR502FPR [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF936XZE|/files/ENCFF936XZE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR502FPR | float |
DNase-seq_ENCSR502FPR |
DNase-seq ENCSR502FPR [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0636, 10.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF222KPO.bed.gz | 820.93 KB | 6b59290c663dc8282202cbd7a51cee25 |
| ENCFF222KPO.bed.gz.dvc | 100.0 B | 9c082db4e123011b305aa216d35f97bb |
| ENCFF222KPO.tabix.bed.gz | 755.63 KB | 18e8df02f669b9f0d00433d4c9d418ca |
| ENCFF222KPO.tabix.bed.gz.dvc | 106.0 B | 05d3a93c5ee262af334f3f7edbf30461 |
| ENCFF222KPO.tabix.bed.gz.tbi | 226.98 KB | a01f319e01a7d9edce33d395bcb290c2 |
| ENCFF222KPO.tabix.bed.gz.tbi.dvc | 110.0 B | 5de0d88ca5e8e8943307c6b1016b890e |
| genomic_resource.yaml | 2.28 KB | bcdfccb28f9c19ea421e9439dba6080e |
| genomic_resource_original.yaml | 2.13 KB | 69f159eb1e94e4cabe291f34d741eff9 |
| statistics/ |