Resource

Id DNase-seq/ENCSR501FWCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR501FWC [biosample_summary="Homo sapiens heart left ventricle tissue female embryo (136 days)"]
Description
Labels
  • accession: ENCSR501FWC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002084/
  • biosample_summary: Homo sapiens heart left ventricle tissue female embryo (136 days)
  • date_created: 2015-09-29T04:06:41.170244+00:00
  • date_released: 2016-05-09
  • doi: 10.17989/ENCSR501FWC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (136 days)
  • status: released
  • submitter_comment: The former replicate 1 of this experiment (ENCBS931FTX/ENCLB652THU) was moved to ENCSR946DXB on January 29, 2018 as the production lab felt that it was a more scientifically relevant biological replicate for ENCBS743EKM.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR501FWC float

DNase-seq_ENCSR501FWC
DNase-seq ENCSR501FWC [biosample_summary="Homo sapiens heart left ventricle tissue female embryo (136 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR501FWC [1, 1.12e+04]
n
32,319,920
mean
128
sd
137

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 323199201.00% 215094
chr1 2950715 1.19% 19646
chr2 2689300 1.11% 17905
chr3 2255018 1.14% 15006
chr4 1845254 0.97% 12266
chr5 1924797 1.06% 12812
chr6 2023781 1.18% 13464
chr7 1699895 1.07% 11305
chr8 1539648 1.06% 10247
chr9 1310976 0.95% 8727
chr10 1611439 1.20% 10708
chr11 1598864 1.18% 10645
chr12 1568518 1.18% 10446
chr13 999576 0.87% 6654
chr14 960112 0.90% 6388
chr15 1072453 1.05% 7139
chr16 902271 1.00% 6005
chr17 1186816 1.43% 7900
chr18 800925 1.00% 5325
chr19 860479 1.47% 5733
chr20 723830 1.12% 4822
chr21 383098 0.82% 2549
chr22 514646 1.01% 3428
chrX 890909 0.57% 5930
chrY 6600 0.01% 44
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 215094 2 450 150.26 150
global segment-length histogram

Files

Filename Size md5
ENCFF224GQJ.bed.gz 2.04 MB 494ec05f40d3af4ee951f0583d347edd
ENCFF224GQJ.tabix.bed.gz 1.76 MB d49546966e782c97203031e4ad5ac146
ENCFF224GQJ.tabix.bed.gz.tbi 660.08 KB ba37e27964df78269fd3750b6ac6a4e9
genomic_resource.yaml 1.66 KB 233307730b085571069ea0e572db5a03
statistics/