DNase-seq_ENCSR499IFY
DNase-seq ENCSR499IFY [biosample_summary="Homo sapiens placenta tissue embryo (53 days)"]
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| Id: | DNase-seq/ENCSR499IFY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR499IFY [biosample_summary="Homo sapiens placenta tissue embryo (53 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: embryo (53 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF025ERJ|/files/ENCFF025ERJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR499IFY | float |
DNase-seq_ENCSR499IFY |
DNase-seq ENCSR499IFY [biosample_summary="Homo sapiens placenta tissue embryo (53 days)"]
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[0.024, 9.18] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF491ZQT.bed.gz | 1.78 MB | aa1659f686129ae5cb8bc539663b3c28 |
| ENCFF491ZQT.bed.gz.dvc | 101.0 B | d7f4fcce0c81af9f455f3069741ad232 |
| ENCFF491ZQT.tabix.bed.gz | 1.63 MB | bde3b7bee6f10a6a2c25d002fe16f2dc |
| ENCFF491ZQT.tabix.bed.gz.dvc | 107.0 B | 920f6937b6d02502eafc81a6c1f37136 |
| ENCFF491ZQT.tabix.bed.gz.tbi | 519.51 KB | bf5c77d0e31f7d1bf3472b7fe1accca7 |
| ENCFF491ZQT.tabix.bed.gz.tbi.dvc | 110.0 B | 57e471a8b9cf61c4d4d4a70b8ebbbcf4 |
| genomic_resource.yaml | 2.0 KB | 30b8b631ffcebcb23b7ac74a928f4c20 |
| genomic_resource_original.yaml | 1.9 KB | 73bf5959596028220d559e4d1387de04 |
| statistics/ |