DNase-seq_ENCSR498RLX
DNase-seq ENCSR498RLX [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
×
| Id: | DNase-seq/ENCSR498RLX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR498RLX [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF246QEH|/files/ENCFF246QEH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR498RLX | float |
DNase-seq_ENCSR498RLX |
DNase-seq ENCSR498RLX [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
|
|
[0.0693, 22.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF035BFR.bed.gz | 764.0 KB | 386539ddf207b026cf4623c6bd20cc81 |
| ENCFF035BFR.bed.gz.dvc | 100.0 B | 070c73fdf21a69f2bdb3a515d6470a44 |
| ENCFF035BFR.tabix.bed.gz | 696.6 KB | 706359b5d12c87cacd80ad4c7a302b4d |
| ENCFF035BFR.tabix.bed.gz.dvc | 106.0 B | 8ce8ab51e4a3a7e19138b9d0b2e2717b |
| ENCFF035BFR.tabix.bed.gz.tbi | 276.58 KB | fb856989c147e6fbc0048c5a2673bfe4 |
| ENCFF035BFR.tabix.bed.gz.tbi.dvc | 110.0 B | 718f3931262edba3e9d43c0e988f4695 |
| genomic_resource.yaml | 2.31 KB | d2cb4f4d9aa268b0a1ed8dadc1de3b99 |
| genomic_resource_original.yaml | 2.15 KB | 259a5a15563435c71d5bf3d2b286f842 |
| statistics/ |