Resource

Id DNase-seq/ENCSR498FCFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR498FCF [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR498FCF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)
  • date_created: 2020-04-19T18:36:58.377057+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR498FCF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR498FCF float

DNase-seq_ENCSR498FCF
DNase-seq ENCSR498FCF [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR498FCF [0.0697, 43.6]
n
13,341,206
mean
3.08
sd
4.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 133412060.41% 65801
chr1 1252604 0.50% 6172
chr2 1090789 0.45% 5400
chr3 649272 0.33% 3180
chr4 385989 0.20% 1864
chr5 625359 0.34% 3062
chr6 606021 0.35% 2994
chr7 640296 0.40% 3141
chr8 563283 0.39% 2758
chr9 591338 0.43% 2947
chr10 703183 0.53% 3526
chr11 785664 0.58% 3874
chr12 572588 0.43% 2822
chr13 240449 0.21% 1153
chr14 477477 0.45% 2372
chr15 403657 0.40% 2045
chr16 494121 0.55% 2461
chr17 825793 0.99% 4070
chr18 202834 0.25% 999
chr19 717471 1.22% 3524
chr20 426494 0.66% 2114
chr21 232927 0.50% 1144
chr22 520267 1.02% 2547
chrX 322725 0.21% 1580
chrY 10605 0.02% 52
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65801 1 1020 202.75 195
global segment-length histogram

Files

Filename Size md5
ENCFF013FAE.bed.gz 709.04 KB 8f6f100f141f8e1b1e557c0dcdb35673
ENCFF013FAE.tabix.bed.gz 653.67 KB b3adf3541590769d9a40401172ad8ca0
ENCFF013FAE.tabix.bed.gz.tbi 217.6 KB 2608bc3a11f2fce13c7c6db562da1afd
genomic_resource.yaml 1.26 KB c28266c0cb64ef565a83a846295165a1
statistics/