Resource

Id DNase-seq/ENCSR497NLUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR497NLU [biosample_summary="Homo sapiens T-cell male adult (28 years)"]
Description
Labels
  • accession: ENCSR497NLU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (28 years)
  • date_created: 2020-03-30T19:01:27.748452+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR497NLU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (28 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR497NLU float

DNase-seq_ENCSR497NLU

DNase-seq ENCSR497NLU [biosample_summary="Homo sapiens T-cell male adult (28 years)"]
HISTOGRAM FOR DNase-seq_ENCSR497NLU [0.16, 115]
n
11,276,225
mean
6.62
sd
9.94

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 112762250.35% 62621
chr1 1113585 0.45% 6211
chr2 797929 0.33% 4458
chr3 625911 0.32% 3487
chr4 408475 0.21% 2263
chr5 513103 0.28% 2837
chr6 656333 0.38% 3635
chr7 522793 0.33% 2932
chr8 421745 0.29% 2377
chr9 450122 0.33% 2517
chr10 506754 0.38% 2805
chr11 574325 0.43% 3199
chr12 575096 0.43% 3194
chr13 236986 0.21% 1318
chr14 399578 0.37% 2229
chr15 360310 0.35% 2014
chr16 457038 0.51% 2533
chr17 678973 0.82% 3720
chr18 194081 0.24% 1085
chr19 688665 1.17% 3717
chr20 326196 0.51% 1830
chr21 143093 0.31% 774
chr22 271984 0.54% 1511
chrX 338725 0.22% 1895
chrY 14425 0.03% 80
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 62621 5 840 180.07 180
global segment-length histogram

Files

Filename Size md5
ENCFF265ZRC.bed.gz 698.19 KB a0599e254044ab548f0f7f0d99338715
ENCFF265ZRC.tabix.bed.gz 638.73 KB 1e27fc9c5e66fac347c0921dee2b16b1
ENCFF265ZRC.tabix.bed.gz.tbi 273.3 KB 93d6dd5df5da7bba90d89ba7df4ed8cd
genomic_resource.yaml 1.18 KB b51782a21a6af55d0fe1c87f2caaa9e6
statistics/