Resource

Id DNase-seq/ENCSR496PSHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR496PSH [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR496PSH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)
  • date_created: 2020-12-10T18:27:51.252128+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR496PSH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR496PSH float

DNase-seq_ENCSR496PSH
DNase-seq ENCSR496PSH [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR496PSH [0.0459, 22.1]
n
22,105,586
mean
1.92
sd
2.35

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 221055860.69% 117987
chr1 2088018 0.84% 10955
chr2 1710073 0.71% 9307
chr3 1270266 0.64% 6828
chr4 864241 0.45% 4614
chr5 1077718 0.59% 5902
chr6 1154180 0.68% 6190
chr7 1140286 0.72% 6124
chr8 974327 0.67% 5259
chr9 982702 0.71% 5196
chr10 1114962 0.83% 5985
chr11 1215948 0.90% 6509
chr12 1040459 0.78% 5542
chr13 491921 0.43% 2662
chr14 749157 0.70% 4004
chr15 746807 0.73% 4026
chr16 857016 0.95% 4550
chr17 1127871 1.35% 5866
chr18 427896 0.53% 2349
chr19 1040051 1.77% 5266
chr20 661598 1.03% 3515
chr21 255339 0.55% 1384
chr22 577036 1.14% 3041
chrX 537377 0.34% 2910
chrY 337 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117987 1 990 187.36 180
global segment-length histogram

Files

Filename Size md5
ENCFF608UXV.bed.gz 1.27 MB 6d566f364c92c73af33356624a6ab9c0
ENCFF608UXV.tabix.bed.gz 1.16 MB 64ddadd4d76ec5db9ee4d3b970713344
ENCFF608UXV.tabix.bed.gz.tbi 444.31 KB 2e20f1cd41a083104af1742730b88385
genomic_resource.yaml 1.47 KB d31631f3f0b333fc3a778453a070b42e
statistics/