| Id: | DNase-seq/ENCSR494IWJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR494IWJ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF383WYC|/files/ENCFF383WYC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 29379084 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR494IWJ | float |
DNase-seq_ENCSR494IWJ |
DNase-seq ENCSR494IWJ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours"]
|
 |
[0.341, 35.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF638DIE.bed.gz | 413.85 KB | 51a97a9e3ab9e8c07657830790c8cab9 |
| ENCFF638DIE.bed.gz.dvc | 100.0 B | 01a3270535208b970eb290c3a1e480cc |
| ENCFF638DIE.tabix.bed.gz | 373.05 KB | 7d62aedd3452b7c8f74a6435588d5679 |
| ENCFF638DIE.tabix.bed.gz.dvc | 106.0 B | 58c61b357b64a20d141364a206973ae8 |
| ENCFF638DIE.tabix.bed.gz.tbi | 209.84 KB | fbc5b2d3c4e4f9b181b42532ca3fd908 |
| ENCFF638DIE.tabix.bed.gz.tbi.dvc | 110.0 B | aafb90478545e2d1c32df3205cc1d8f1 |
| genomic_resource.yaml | 2.42 KB | ea4dfcca3e61dd067096b22f76760a86 |
| genomic_resource_original.yaml | 2.2 KB | ec39300f58b5433dc92480f984b32c4f |
| statistics/ |