Resource

Id DNase-seq/ENCSR493VDScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR493VDS [biosample_summary="Homo sapiens putamen tissue male adult (78 years)"]
Description
Labels
  • accession: ENCSR493VDS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001874/
  • biosample_summary: Homo sapiens putamen tissue male adult (78 years)
  • date_created: 2015-03-27T22:50:13.033614+00:00
  • date_released: 2016-05-09
  • doi: 10.17989/ENCSR493VDS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (78 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR493VDS float

DNase-seq_ENCSR493VDS
DNase-seq ENCSR493VDS [biosample_summary="Homo sapiens putamen tissue male adult (78 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR493VDS [3.95, 5.64e+03]
n
33,111,100
mean
29.2
sd
50.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 331111001.03% 219776
chr1 3046330 1.22% 20211
chr2 2692340 1.11% 17860
chr3 2169080 1.09% 14392
chr4 1604550 0.84% 10651
chr5 1857100 1.02% 12326
chr6 1953560 1.14% 12974
chr7 1732430 1.09% 11503
chr8 1496680 1.03% 9936
chr9 1400060 1.01% 9298
chr10 1642030 1.23% 10905
chr11 1835580 1.36% 12180
chr12 1583360 1.19% 10510
chr13 878380 0.77% 5826
chr14 1135630 1.06% 7539
chr15 1060090 1.04% 7039
chr16 1174200 1.30% 7792
chr17 1426990 1.71% 9467
chr18 751780 0.94% 4986
chr19 1064830 1.82% 7075
chr20 891300 1.38% 5926
chr21 441700 0.95% 2932
chr22 642710 1.26% 4259
chrX 591660 0.38% 3932
chrY 38730 0.07% 257
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 219776 150 650 150.66 150
global segment-length histogram

Files

Filename Size md5
ENCFF950EWN.bed.gz 2.89 MB 80a85526ad2f2e146fcf696ff2dc971e
ENCFF950EWN.tabix.bed.gz 2.0 MB 32ef904aec2198fdacd90a3e099d9a4f
ENCFF950EWN.tabix.bed.gz.tbi 585.28 KB 62b6ed7e5322153a9d1b12256c9e2d1f
genomic_resource.yaml 1.2 KB 36ff966270476eecfdd0060bd7c0e0cb
statistics/