| Id: | DNase-seq/ENCSR493IQY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR493IQY [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF968IHM|/files/ENCFF968IHM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 42663282 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR493IQY | float |
DNase-seq_ENCSR493IQY |
DNase-seq ENCSR493IQY [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
|
 |
[0.258, 81] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF922AGQ.bed.gz | 546.5 KB | 89f35cda85296829e7371f85dfe0354d |
| ENCFF922AGQ.bed.gz.dvc | 100.0 B | 7f820fddc874b0c21ea1f25c28d1018b |
| ENCFF922AGQ.tabix.bed.gz | 500.73 KB | 9dcc53645bdc0113d600b6c57939ca4e |
| ENCFF922AGQ.tabix.bed.gz.dvc | 106.0 B | d772a573ce2e16145a4a1fa308363216 |
| ENCFF922AGQ.tabix.bed.gz.tbi | 231.27 KB | 855e137668425b53027ce5b89d153e3a |
| ENCFF922AGQ.tabix.bed.gz.tbi.dvc | 110.0 B | 6c644eded170347e6c5143837edcf997 |
| genomic_resource.yaml | 2.21 KB | f5e8ab87992dbfb4a43b35562a03973c |
| genomic_resource_original.yaml | 2.03 KB | b0fe63f3b3e53cc154ef8b9171d852e6 |
| statistics/ |