Resource

Id DNase-seq/ENCSR493IAYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR493IAY [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 18 days, kit ligand for 18 days, hydrocortisone succinate for 18 days, erythropoietin for 18 days"]
Description
Labels
  • accession: ENCSR493IAY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000837/
  • biosample_summary: Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 18 days, kit ligand for 18 days, hydrocortisone succinate for 18 days, erythropoietin for 18 days
  • date_created: 2015-03-30T18:28:13.420597+00:00
  • date_released: 2016-05-09
  • doi: 10.17989/ENCSR493IAY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (25 years) treated with interleukin-3 for 18 days, kit ligand for 18 days, hydrocortisone succinate for 18 days, erythropoietin for 18 days
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR493IAY float

DNase-seq_ENCSR493IAY
DNase-seq ENCSR493IAY [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 18 days, kit ligand for 18 days, hydrocortisone succinate for 18 days, erythropoietin for 18 days"]
 HISTOGRAM FOR DNase-seq_ENCSR493IAY [0.0264, 60.9]
n
15,607,077
mean
3.31
sd
5.93

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 156070770.49% 78909
chr1 1611566 0.65% 8049
chr2 1110769 0.46% 5679
chr3 959254 0.48% 4857
chr4 679144 0.36% 3411
chr5 808971 0.45% 4054
chr6 988199 0.58% 4903
chr7 723660 0.45% 3718
chr8 600054 0.41% 3063
chr9 626188 0.45% 3174
chr10 703444 0.53% 3541
chr11 872663 0.65% 4333
chr12 805534 0.60% 4039
chr13 348260 0.30% 1765
chr14 517640 0.48% 2600
chr15 452115 0.44% 2321
chr16 566572 0.63% 2903
chr17 800494 0.96% 4043
chr18 267494 0.33% 1358
chr19 778053 1.33% 3945
chr20 403052 0.63% 2080
chr21 149330 0.32% 760
chr22 344065 0.68% 1765
chrX 465675 0.30% 2418
chrY 24881 0.04% 130
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 78909 1 1040 197.79 180
global segment-length histogram

Files

Filename Size md5
ENCFF628VVC.bed.gz 884.67 KB ea2e3ed04e396d2479541e577945eed5
ENCFF628VVC.tabix.bed.gz 813.06 KB 95ebf8f1c3b321948035a44a48c43286
ENCFF628VVC.tabix.bed.gz.tbi 299.77 KB dc659c2a365bfb92a3ef19625e513dc5
genomic_resource.yaml 1.9 KB 8e42017cb587dab937c6f74c42f558b4
statistics/