Resource
| Id | DNase-seq/ENCSR490UQP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR490UQP [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (87 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (87 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF465WGX|/files/ENCFF465WGX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR490UQP | float |
DNase-seq_ENCSR490UQP |
DNase-seq ENCSR490UQP [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (87 years)"]
|
 |
[0.196, 10.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 4049764 | 0.13% | 23260 |
| chr1 | 417990 | 0.17% | 2402 |
| chr2 | 274010 | 0.11% | 1606 |
| chr3 | 233444 | 0.12% | 1341 |
| chr4 | 140570 | 0.07% | 831 |
| chr5 | 185830 | 0.10% | 1073 |
| chr6 | 210861 | 0.12% | 1218 |
| chr7 | 194738 | 0.12% | 1124 |
| chr8 | 151772 | 0.10% | 911 |
| chr9 | 169702 | 0.12% | 995 |
| chr10 | 167874 | 0.13% | 1006 |
| chr11 | 227860 | 0.17% | 1300 |
| chr12 | 215080 | 0.16% | 1213 |
| chr13 | 73006 | 0.06% | 426 |
| chr14 | 131173 | 0.12% | 756 |
| chr15 | 138632 | 0.14% | 803 |
| chr16 | 176140 | 0.19% | 990 |
| chr17 | 232245 | 0.28% | 1309 |
| chr18 | 58824 | 0.07% | 371 |
| chr19 | 307779 | 0.53% | 1603 |
| chr20 | 113979 | 0.18% | 684 |
| chr21 | 37776 | 0.08% | 223 |
| chr22 | 95486 | 0.19% | 543 |
| chrX | 94851 | 0.06% | 531 |
| chrY | 142 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 23260 | 2 | 640 | 174.11 | 173 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF264NFU.bed.gz | 254.74 KB | b4df2511411d358779b66c572dc1dc47 |
| ENCFF264NFU.tabix.bed.gz | 228.04 KB | 8447f137acfd99e0935b034e9ae2bb22 |
| ENCFF264NFU.tabix.bed.gz.tbi | 157.17 KB | 63ed7e26c6c30d2e9e669ac5d45618a6 |
| genomic_resource.yaml | 2.09 KB | 45edfb726aecd109c2e12839651da305 |
| statistics/ |