DNase-seq_ENCSR490UQP
DNase-seq ENCSR490UQP [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (87 years)"]
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| Id: | DNase-seq/ENCSR490UQP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR490UQP [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (87 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (87 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF465WGX|/files/ENCFF465WGX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR490UQP | float |
DNase-seq_ENCSR490UQP |
DNase-seq ENCSR490UQP [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (87 years)"]
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[0.196, 10.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF264NFU.bed.gz | 254.74 KB | b4df2511411d358779b66c572dc1dc47 |
| ENCFF264NFU.bed.gz.dvc | 100.0 B | ab7d54e1a00066fcb3bafb07691f7fa1 |
| ENCFF264NFU.tabix.bed.gz | 228.04 KB | 8447f137acfd99e0935b034e9ae2bb22 |
| ENCFF264NFU.tabix.bed.gz.dvc | 106.0 B | a1745845f3823e211f605a9fa3283b59 |
| ENCFF264NFU.tabix.bed.gz.tbi | 157.17 KB | 63ed7e26c6c30d2e9e669ac5d45618a6 |
| ENCFF264NFU.tabix.bed.gz.tbi.dvc | 110.0 B | 857bb40a3002975ae0e79fb977082dc5 |
| genomic_resource.yaml | 2.09 KB | 45edfb726aecd109c2e12839651da305 |
| genomic_resource_original.yaml | 1.97 KB | c6af429eddb3dd32a2aad6fa90519118 |
| statistics/ |