Resource

Id DNase-seq/ENCSR488PHTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR488PHT [biosample_summary="Homo sapiens left lung tissue male embryo (113 days)"]
Description
Labels
  • accession: ENCSR488PHT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002168/
  • biosample_summary: Homo sapiens left lung tissue male embryo (113 days)
  • date_created: 2015-09-16T21:42:54.869461+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR488PHT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (113 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR488PHT float

DNase-seq_ENCSR488PHT

DNase-seq ENCSR488PHT [biosample_summary="Homo sapiens left lung tissue male embryo (113 days)"]
HISTOGRAM FOR DNase-seq_ENCSR488PHT [3, 1.1e+03]
n
15,859,971
mean
64.6
sd
79.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 158599710.49% 105409
chr1 1421687 0.57% 9445
chr2 1287085 0.53% 8556
chr3 1067520 0.54% 7098
chr4 843976 0.44% 5606
chr5 921293 0.51% 6119
chr6 980583 0.57% 6516
chr7 822951 0.52% 5473
chr8 745633 0.51% 4950
chr9 672561 0.49% 4471
chr10 801627 0.60% 5328
chr11 811210 0.60% 5393
chr12 779775 0.59% 5184
chr13 459490 0.40% 3045
chr14 491487 0.46% 3263
chr15 514336 0.50% 3419
chr16 473749 0.52% 3153
chr17 606299 0.73% 4033
chr18 377749 0.47% 2511
chr19 479980 0.82% 3196
chr20 390012 0.61% 2594
chr21 182850 0.39% 1217
chr22 263556 0.52% 1753
chrX 441762 0.28% 2935
chrY 22800 0.04% 151
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 105409 18 450 150.46 150
global segment-length histogram

Files

Filename Size md5
ENCFF676GRC.bed.gz 1023.14 KB 5154ab70fd7405835a6b0a822dffd6db
ENCFF676GRC.tabix.bed.gz 879.37 KB 0250c9c390ecead975c5ef548dabf880
ENCFF676GRC.tabix.bed.gz.tbi 484.08 KB 97c7c58afcdcfd70b2e3a42c0801e612
genomic_resource.yaml 2.58 KB 8ca36f25348dc18f6cea9ad6eb606fea
statistics/