Resource
| Id | DNase-seq/ENCSR486KKY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR486KKY [biosample_summary="Homo sapiens T follicular helper cell female adult (25 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (25 years) output_type: peaks audit_warning: Alignment file {ENCFF580HRZ|/files/ENCFF580HRZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 40482510 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR486KKY | float |
DNase-seq_ENCSR486KKY |
DNase-seq ENCSR486KKY [biosample_summary="Homo sapiens T follicular helper cell female adult (25 years)"]
|
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[0.247, 101] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7858183 | 0.24% | 43324 |
| chr1 | 796510 | 0.32% | 4430 |
| chr2 | 538915 | 0.22% | 2971 |
| chr3 | 422249 | 0.21% | 2329 |
| chr4 | 269437 | 0.14% | 1479 |
| chr5 | 345734 | 0.19% | 1929 |
| chr6 | 461866 | 0.27% | 2522 |
| chr7 | 358709 | 0.23% | 2006 |
| chr8 | 280743 | 0.19% | 1560 |
| chr9 | 310560 | 0.22% | 1710 |
| chr10 | 343869 | 0.26% | 1904 |
| chr11 | 401501 | 0.30% | 2217 |
| chr12 | 401015 | 0.30% | 2208 |
| chr13 | 158253 | 0.14% | 860 |
| chr14 | 286061 | 0.27% | 1572 |
| chr15 | 250546 | 0.25% | 1414 |
| chr16 | 320314 | 0.35% | 1764 |
| chr17 | 487494 | 0.59% | 2659 |
| chr18 | 122752 | 0.15% | 685 |
| chr19 | 542961 | 0.93% | 2884 |
| chr20 | 221515 | 0.34% | 1235 |
| chr21 | 91698 | 0.20% | 511 |
| chr22 | 197064 | 0.39% | 1093 |
| chrX | 248334 | 0.16% | 1381 |
| chrY | 83 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 43324 | 7 | 800 | 181.38 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF927RRR.bed.gz | 484.8 KB | 9d5b4c707b0ac54d80a2b3fa18819994 |
| ENCFF927RRR.tabix.bed.gz | 440.13 KB | 255b098f7f0ee2a5ad53c02bb3c50c01 |
| ENCFF927RRR.tabix.bed.gz.tbi | 213.56 KB | 73601eb97d359d0a4fa4409427021e4a |
| genomic_resource.yaml | 1.86 KB | c77b66b06d48bd49ff96dd557268063d |
| statistics/ |
