Resource

Id DNase-seq/ENCSR486KKYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR486KKY [biosample_summary="Homo sapiens T follicular helper cell female adult (25 years)"]
Description
Labels
  • accession: ENCSR486KKY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002038/
  • biosample_summary: Homo sapiens T follicular helper cell female adult (25 years)
  • date_created: 2020-04-13T17:34:05.839298+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR486KKY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (25 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR486KKY float

DNase-seq_ENCSR486KKY

DNase-seq ENCSR486KKY [biosample_summary="Homo sapiens T follicular helper cell female adult (25 years)"]
HISTOGRAM FOR DNase-seq_ENCSR486KKY [0.247, 101]
n
7,858,183
mean
9.67
sd
12.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 78581830.24% 43324
chr1 796510 0.32% 4430
chr2 538915 0.22% 2971
chr3 422249 0.21% 2329
chr4 269437 0.14% 1479
chr5 345734 0.19% 1929
chr6 461866 0.27% 2522
chr7 358709 0.23% 2006
chr8 280743 0.19% 1560
chr9 310560 0.22% 1710
chr10 343869 0.26% 1904
chr11 401501 0.30% 2217
chr12 401015 0.30% 2208
chr13 158253 0.14% 860
chr14 286061 0.27% 1572
chr15 250546 0.25% 1414
chr16 320314 0.35% 1764
chr17 487494 0.59% 2659
chr18 122752 0.15% 685
chr19 542961 0.93% 2884
chr20 221515 0.34% 1235
chr21 91698 0.20% 511
chr22 197064 0.39% 1093
chrX 248334 0.16% 1381
chrY 83 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43324 7 800 181.38 180
global segment-length histogram

Files

Filename Size md5
ENCFF927RRR.bed.gz 484.8 KB 9d5b4c707b0ac54d80a2b3fa18819994
ENCFF927RRR.tabix.bed.gz 440.13 KB 255b098f7f0ee2a5ad53c02bb3c50c01
ENCFF927RRR.tabix.bed.gz.tbi 213.56 KB 73601eb97d359d0a4fa4409427021e4a
genomic_resource.yaml 1.86 KB c77b66b06d48bd49ff96dd557268063d
statistics/