DNase-seq_ENCSR486KKY
DNase-seq ENCSR486KKY [biosample_summary="Homo sapiens T follicular helper cell female adult (25 years)"]
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| Id: | DNase-seq/ENCSR486KKY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR486KKY [biosample_summary="Homo sapiens T follicular helper cell female adult (25 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (25 years) output_type: peaks audit_warning: Alignment file {ENCFF580HRZ|/files/ENCFF580HRZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 40482510 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR486KKY | float |
DNase-seq_ENCSR486KKY |
DNase-seq ENCSR486KKY [biosample_summary="Homo sapiens T follicular helper cell female adult (25 years)"]
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[0.247, 101] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF927RRR.bed.gz | 484.8 KB | 9d5b4c707b0ac54d80a2b3fa18819994 |
| ENCFF927RRR.bed.gz.dvc | 100.0 B | 23844607732c9e22b29e299a4bab37e9 |
| ENCFF927RRR.tabix.bed.gz | 440.13 KB | 255b098f7f0ee2a5ad53c02bb3c50c01 |
| ENCFF927RRR.tabix.bed.gz.dvc | 106.0 B | a7c5cff3cfeeccd23fd2860bc5a216c9 |
| ENCFF927RRR.tabix.bed.gz.tbi | 213.56 KB | 73601eb97d359d0a4fa4409427021e4a |
| ENCFF927RRR.tabix.bed.gz.tbi.dvc | 110.0 B | 675c4348a9296850b422970e8130d6f3 |
| genomic_resource.yaml | 1.86 KB | c77b66b06d48bd49ff96dd557268063d |
| genomic_resource_original.yaml | 1.75 KB | 9df31cbbf8a802a3b076f05f2ad23703 |
| statistics/ |