| Id: | DNase-seq/ENCSR486FMF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR486FMF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF804NKU|/files/ENCFF804NKU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 31060780 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR486FMF | float |
DNase-seq_ENCSR486FMF |
DNase-seq ENCSR486FMF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
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[0.29, 76.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF787KMY.bed.gz | 543.0 KB | 267012f0bf71d6eec11faa6730d8da02 |
| ENCFF787KMY.bed.gz.dvc | 100.0 B | 539ce42bae4554b08ff91ddc9b6a0b11 |
| ENCFF787KMY.tabix.bed.gz | 490.4 KB | a8554133a30fad6d9d2be162df00e601 |
| ENCFF787KMY.tabix.bed.gz.dvc | 106.0 B | ba8a668db4468d5584c3d3d021c0749b |
| ENCFF787KMY.tabix.bed.gz.tbi | 243.22 KB | f735ffbcc97c529613173138a838c88f |
| ENCFF787KMY.tabix.bed.gz.tbi.dvc | 110.0 B | b82aa2d37832b8176bcd1f339384f866 |
| genomic_resource.yaml | 2.45 KB | 13d0be761c3bc7fcaeeec5c57ba60bd7 |
| genomic_resource_original.yaml | 2.22 KB | 40098317da4d6059198cfe7048eaa92f |
| statistics/ |