DNase-seq_ENCSR484UAU
DNase-seq ENCSR484UAU [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)"]
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| Id: | DNase-seq/ENCSR484UAU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR484UAU [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN918SCJ|/analyses/ENCAN918SCJ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF481EJF|/files/ENCFF481EJF/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR484UAU | float |
DNase-seq_ENCSR484UAU |
DNase-seq ENCSR484UAU [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)"]
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[7, 4.71e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF127TDY.bed.gz | 547.2 KB | b9da593c96aff328ff8ad62fd4055300 |
| ENCFF127TDY.bed.gz.dvc | 100.0 B | de9d5514ffee6f37e2a7bc844345e082 |
| ENCFF127TDY.tabix.bed.gz | 464.77 KB | 69c8dcfedfd5f604d9ed15bae4d1b0ce |
| ENCFF127TDY.tabix.bed.gz.dvc | 106.0 B | ee31f38834bf0c9f6fd557c3e3d2eb41 |
| ENCFF127TDY.tabix.bed.gz.tbi | 278.26 KB | 54579e9481dd548e0d6441a459168b18 |
| ENCFF127TDY.tabix.bed.gz.tbi.dvc | 110.0 B | bb4cb18a3aaea73a7c74a52ac495e033 |
| genomic_resource.yaml | 2.19 KB | 2daa56b68b592b24c97e5a7d90b8600c |
| genomic_resource_original.yaml | 2.09 KB | 2a37936c8aa8074ea09137c6b37b6842 |
| statistics/ |