Resource

Id DNase-seq/ENCSR484UAUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR484UAU [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR484UAU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001323/
  • biosample_summary: Homo sapiens tibial nerve tissue male adult (37 years)
  • date_created: 2019-08-18T16:57:12.603674+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR484UAU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR484UAU float

DNase-seq_ENCSR484UAU

DNase-seq ENCSR484UAU [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)"]
HISTOGRAM FOR DNase-seq_ENCSR484UAU [7, 4.71e+03]
n
8,177,613
mean
98.3
sd
91

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 81776130.25% 54387
chr1 819962 0.33% 5456
chr2 620981 0.26% 4130
chr3 509130 0.26% 3378
chr4 347029 0.18% 2300
chr5 414984 0.23% 2757
chr6 475928 0.28% 3165
chr7 385138 0.24% 2563
chr8 358345 0.25% 2387
chr9 341075 0.25% 2265
chr10 394309 0.29% 2623
chr11 430456 0.32% 2864
chr12 425670 0.32% 2831
chr13 191801 0.17% 1277
chr14 276299 0.26% 1841
chr15 275795 0.27% 1828
chr16 278881 0.31% 1855
chr17 396557 0.48% 2644
chr18 150872 0.19% 1006
chr19 368216 0.63% 2453
chr20 224516 0.35% 1497
chr21 101979 0.22% 678
chr22 158520 0.31% 1054
chrX 218774 0.14% 1452
chrY 12396 0.02% 83
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54387 8 450 150.36 150
global segment-length histogram

Files

Filename Size md5
ENCFF127TDY.bed.gz 547.2 KB b9da593c96aff328ff8ad62fd4055300
ENCFF127TDY.tabix.bed.gz 464.77 KB 69c8dcfedfd5f604d9ed15bae4d1b0ce
ENCFF127TDY.tabix.bed.gz.tbi 278.26 KB 54579e9481dd548e0d6441a459168b18
genomic_resource.yaml 2.19 KB 2daa56b68b592b24c97e5a7d90b8600c
statistics/