Resource

Id DNase-seq/ENCSR483PGPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR483PGP [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-4 for 1 hour"]
Description
Labels
  • accession: ENCSR483PGP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-4 for 1 hour
  • date_created: 2021-11-18T17:43:07.872937+00:00
  • date_released: 2022-06-07
  • doi: 10.17989/ENCSR483PGP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (39 years) treated with Interleukin-4 for 1 hour
  • status: released
  • submitter_comment: This dataset includes replicates and files that were previously associated with dataset ENCSR250GDW.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR483PGP float

DNase-seq_ENCSR483PGP
DNase-seq ENCSR483PGP [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-4 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR483PGP [0.038, 83.5]
n
18,968,010
mean
4.18
sd
8.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 189680100.59% 92660
chr1 1896037 0.76% 9201
chr2 1437470 0.59% 7022
chr3 1101948 0.56% 5400
chr4 718358 0.38% 3548
chr5 909330 0.50% 4465
chr6 1189044 0.70% 5718
chr7 898201 0.56% 4428
chr8 736558 0.51% 3680
chr9 750339 0.54% 3730
chr10 887071 0.66% 4291
chr11 957824 0.71% 4672
chr12 974473 0.73% 4751
chr13 431890 0.38% 2117
chr14 700731 0.65% 3377
chr15 606723 0.59% 2978
chr16 667080 0.74% 3263
chr17 1006876 1.21% 4883
chr18 336462 0.42% 1669
chr19 1009301 1.72% 4767
chr20 499886 0.78% 2481
chr21 223733 0.48% 1105
chr22 404483 0.80% 2021
chrX 594774 0.38% 2947
chrY 29418 0.05% 146
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 92660 2 1260 204.71 200
global segment-length histogram

Files

Filename Size md5
ENCFF050FHX.bed.gz 1.01 MB 6e400fa5b116cbdb28e4954ff93e4343
ENCFF050FHX.tabix.bed.gz 951.55 KB 6e203ea75bed0c4358516dae700072da
ENCFF050FHX.tabix.bed.gz.tbi 350.14 KB ea1ca5ea692f37726b2dfe7285d7d31c
genomic_resource.yaml 1.56 KB 032498ddbe32e6a247bc1fc6dba77002
statistics/