DNase-seq_ENCSR483HUW
DNase-seq ENCSR483HUW [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR483HUW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR483HUW [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF589HKG|/files/ENCFF589HKG/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR483HUW | float |
DNase-seq_ENCSR483HUW |
DNase-seq ENCSR483HUW [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0749, 15.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF046BNJ.bed.gz | 672.34 KB | 09b13fb1675fd52d4af1a7b0e73fb2ed |
| ENCFF046BNJ.bed.gz.dvc | 100.0 B | f57b8243479664fa670fc4bd48c529b6 |
| ENCFF046BNJ.tabix.bed.gz | 611.17 KB | 3328ae8fac5eae6c528deed426875953 |
| ENCFF046BNJ.tabix.bed.gz.dvc | 106.0 B | b5125f7b3cd350b706b284913c46eeac |
| ENCFF046BNJ.tabix.bed.gz.tbi | 290.57 KB | 501b60820f485a24bff065d539a3cd61 |
| ENCFF046BNJ.tabix.bed.gz.tbi.dvc | 110.0 B | 2630780e878b796787fab9be39b88f99 |
| genomic_resource.yaml | 2.25 KB | b7f66d1887e99903c053a792f98610d5 |
| genomic_resource_original.yaml | 2.1 KB | 9ac6aac5aa7de1f5f9a4045374867153 |
| statistics/ |