DNase-seq_ENCSR482HQE
DNase-seq ENCSR482HQE [biosample_summary="Homo sapiens lung tissue female embryo (108 days)"]
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| Id: | DNase-seq/ENCSR482HQE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR482HQE [biosample_summary="Homo sapiens lung tissue female embryo (108 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (108 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN387LLR|/analyses/ENCAN387LLR/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF277GIU|/files/ENCFF277GIU/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 43648360 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF581AVY|/files/ENCFF581AVY/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 43418793 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR482HQE | float |
DNase-seq_ENCSR482HQE |
DNase-seq ENCSR482HQE [biosample_summary="Homo sapiens lung tissue female embryo (108 days)"]
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[1, 1.15e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF913NRZ.bed.gz | 1.26 MB | aa53091cde68286fe23c06ab04a858e2 |
| ENCFF913NRZ.bed.gz.dvc | 101.0 B | 85ff3ded8e173c5672b95bf0ea79db4f |
| ENCFF913NRZ.tabix.bed.gz | 1.08 MB | eb1191a3cc32d4b7c82cd8723381321a |
| ENCFF913NRZ.tabix.bed.gz.dvc | 107.0 B | 16af4de8ef7644a3f1d6ea9bfa2d5fed |
| ENCFF913NRZ.tabix.bed.gz.tbi | 555.26 KB | 5f028948c1e96b8eb940dba9cadcee90 |
| ENCFF913NRZ.tabix.bed.gz.tbi.dvc | 110.0 B | cc92e69c518e991764bff3c71d54c10b |
| genomic_resource.yaml | 2.58 KB | 9699356c7e4cab5ee7fb6c8ed57e2337 |
| genomic_resource_original.yaml | 2.49 KB | 2368d28a375befa20d2944094f1886e2 |
| statistics/ |