DNase-seq_ENCSR480SNC
DNase-seq ENCSR480SNC [biosample_summary="Homo sapiens naive B cell male adult (40 years)"]
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| Id: | DNase-seq/ENCSR480SNC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR480SNC [biosample_summary="Homo sapiens naive B cell male adult (40 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF078AUZ|/files/ENCFF078AUZ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR480SNC | float |
DNase-seq_ENCSR480SNC |
DNase-seq ENCSR480SNC [biosample_summary="Homo sapiens naive B cell male adult (40 years)"]
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[0.0832, 36.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF997DUM.bed.gz | 562.12 KB | b696b45b0c96b59f2b0f8b819069aa25 |
| ENCFF997DUM.bed.gz.dvc | 100.0 B | d089c1ad6cc9211eee55b56550b3a778 |
| ENCFF997DUM.tabix.bed.gz | 517.22 KB | 89352f731a045b5692d228af2a95d8e4 |
| ENCFF997DUM.tabix.bed.gz.dvc | 106.0 B | f69339eaf9e1542d31c3a2edf5aca678 |
| ENCFF997DUM.tabix.bed.gz.tbi | 241.43 KB | 87126b442de69fdf7bd843d12120e584 |
| ENCFF997DUM.tabix.bed.gz.tbi.dvc | 110.0 B | beadf9e06f121f3b30e15c3c514a713e |
| genomic_resource.yaml | 2.01 KB | aee55b93eb2907159d24c55d5d367363 |
| genomic_resource_original.yaml | 1.91 KB | aa73e36fa54ceb8bac72a565acfce968 |
| statistics/ |