Resource

Id DNase-seq/ENCSR478SWAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR478SWA [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"]
Description
Labels
  • accession: ENCSR478SWA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000497/
  • biosample_summary: Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours
  • date_created: 2019-08-24T00:09:40.767674+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR478SWA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR478SWA float

DNase-seq_ENCSR478SWA
DNase-seq ENCSR478SWA [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR478SWA [0.0481, 67.9]
n
21,503,405
mean
3.76
sd
5.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 215034050.67% 117799
chr1 2177790 0.87% 11852
chr2 1599253 0.66% 8851
chr3 1223857 0.62% 6743
chr4 809117 0.43% 4513
chr5 1003500 0.55% 5598
chr6 1244225 0.73% 6843
chr7 1015840 0.64% 5638
chr8 891325 0.61% 4933
chr9 884915 0.64% 4843
chr10 1007109 0.75% 5555
chr11 1116034 0.83% 6105
chr12 1061394 0.80% 5819
chr13 463070 0.40% 2618
chr14 765090 0.71% 4182
chr15 712597 0.70% 3958
chr16 814231 0.90% 4382
chr17 1207898 1.45% 6415
chr18 376650 0.47% 2094
chr19 1090510 1.86% 5680
chr20 602522 0.93% 3309
chr21 267035 0.57% 1468
chr22 492112 0.97% 2630
chrX 648498 0.42% 3599
chrY 28833 0.05% 171
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117799 2 820 182.54 180
global segment-length histogram

Files

Filename Size md5
ENCFF261QWU.bed.gz 1.29 MB 81ec6a6e4bc2ce409a22bdbf17aa031e
ENCFF261QWU.tabix.bed.gz 1.18 MB 25ceb7964ec791319f5ce6d53ed0bfba
ENCFF261QWU.tabix.bed.gz.tbi 404.49 KB 2e4d11fbee62f64189555e1c9ad161c4
genomic_resource.yaml 1.62 KB 38594ce337111fd5363299bcf351ba02
statistics/