Resource

Id DNase-seq/ENCSR476SDZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR476SDZ [biosample_summary="Homo sapiens muscle of back tissue male embryo (108 days)"]
Description
Labels
  • accession: ENCSR476SDZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002324/
  • biosample_summary: Homo sapiens muscle of back tissue male embryo (108 days)
  • date_created: 2015-09-16T21:42:58.778477+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR476SDZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (108 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR476SDZ float

DNase-seq_ENCSR476SDZ
DNase-seq ENCSR476SDZ [biosample_summary="Homo sapiens muscle of back tissue male embryo (108 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR476SDZ [0.26, 22.6]
n
10,076,289
mean
2.7
sd
2.42

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 100762890.31% 55085
chr1 905418 0.36% 4886
chr2 813070 0.34% 4441
chr3 663293 0.33% 3646
chr4 511686 0.27% 2781
chr5 569034 0.31% 3099
chr6 635319 0.37% 3465
chr7 502044 0.32% 2809
chr8 472764 0.33% 2610
chr9 428751 0.31% 2335
chr10 472645 0.35% 2653
chr11 518469 0.38% 2829
chr12 501639 0.38% 2718
chr13 286517 0.25% 1587
chr14 328947 0.31% 1785
chr15 321093 0.31% 1753
chr16 313285 0.35% 1735
chr17 402118 0.48% 2205
chr18 225472 0.28% 1244
chr19 416623 0.71% 2107
chr20 251923 0.39% 1383
chr21 116097 0.25% 632
chr22 159526 0.31% 908
chrX 252169 0.16% 1432
chrY 8387 0.01% 42
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55085 2 900 182.92 180
global segment-length histogram

Files

Filename Size md5
ENCFF186PHS.bed.gz 581.68 KB c86eddcb1e90d741ae2f6d505eb6a3ac
ENCFF186PHS.tabix.bed.gz 519.38 KB ceaf552b224cda97df9b2698f54ab76f
ENCFF186PHS.tabix.bed.gz.tbi 303.6 KB 0172c168bc00b176b5049fd7e83f643f
genomic_resource.yaml 1.84 KB 539b31e882dee51325b5eec0c36e9d5c
statistics/