| Id: | DNase-seq/ENCSR474HQW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR474HQW [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF916LCH|/files/ENCFF916LCH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 28697004 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR474HQW | float |
DNase-seq_ENCSR474HQW |
DNase-seq ENCSR474HQW [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours"]
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[0.454, 58] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF576ESS.bed.gz | 395.62 KB | 1e32c5426fbc2e8b670c0cd4cf3943f8 |
| ENCFF576ESS.bed.gz.dvc | 100.0 B | fd14405a840ae2c4b4c75ddbd709179d |
| ENCFF576ESS.tabix.bed.gz | 356.41 KB | cd1af2d2d8086b0424e6c624d9a9e617 |
| ENCFF576ESS.tabix.bed.gz.dvc | 106.0 B | e5ab1bf7087275dea65ccac08259299e |
| ENCFF576ESS.tabix.bed.gz.tbi | 194.2 KB | d37cae74a422d184122a7c66e724354f |
| ENCFF576ESS.tabix.bed.gz.tbi.dvc | 110.0 B | 29ff6e732152c93531d1652b29b1e746 |
| genomic_resource.yaml | 2.46 KB | a2a7ee6f0332a235c5c56cb4d86eeb0d |
| genomic_resource_original.yaml | 2.22 KB | 428c7085290f43ef91da9027cf81b1eb |
| statistics/ |