Resource

Id DNase-seq/ENCSR474GZQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR474GZQ [biosample_summary="Homo sapiens retina tissue embryo (125 days) and male embryo (103 days)"]
Description
Labels
  • accession: ENCSR474GZQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000966/
  • biosample_summary: Homo sapiens retina tissue embryo (125 days) and male embryo (103 days)
  • date_created: 2014-03-06T06:23:19.684068+00:00
  • date_released: 2016-05-09
  • doi: 10.17989/ENCSR474GZQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: embryo (125 days) male embryo (103 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR474GZQ float

DNase-seq_ENCSR474GZQ
DNase-seq ENCSR474GZQ [biosample_summary="Homo sapiens retina tissue embryo (125 days) and male embryo (103 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR474GZQ [2, 4.77e+03]
n
27,919,313
mean
82
sd
97.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 279193130.87% 185425
chr1 2428827 0.98% 16141
chr2 2322771 0.96% 15427
chr3 1886233 0.95% 12518
chr4 1600929 0.84% 10638
chr5 1672942 0.92% 11111
chr6 1775454 1.04% 11778
chr7 1454431 0.91% 9664
chr8 1365634 0.94% 9075
chr9 1118036 0.81% 7427
chr10 1344220 1.00% 8927
chr11 1411886 1.05% 9391
chr12 1364500 1.02% 9068
chr13 905063 0.79% 6008
chr14 927963 0.87% 6166
chr15 876995 0.86% 5829
chr16 813427 0.90% 5402
chr17 992896 1.19% 6586
chr18 733039 0.91% 4861
chr19 723277 1.23% 4810
chr20 640717 0.99% 4251
chr21 308964 0.66% 2051
chr22 413104 0.81% 2742
chrX 796776 0.51% 5279
chrY 41229 0.07% 275
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 185425 3 450 150.57 150
global segment-length histogram

Files

Filename Size md5
ENCFF679MSO.bed.gz 1.72 MB 2961e8c9ae18f7130258604fb886d373
ENCFF679MSO.tabix.bed.gz 1.49 MB a16873f5cf05268f123abb490c290f0b
ENCFF679MSO.tabix.bed.gz.tbi 561.0 KB 2e45b4b6cc423ca637043a9fdf541512
genomic_resource.yaml 1.48 KB 377495bc705bc75a04ffe2ba20b78ddd
statistics/