DNase-seq_ENCSR473LSX
DNase-seq ENCSR473LSX [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
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| Id: | DNase-seq/ENCSR473LSX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR473LSX [biosample_summary="Homo sapiens T-cell male adult (38 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) output_type: peaks audit_error: Alignment file {ENCFF800GJQ|/files/ENCFF800GJQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 17564148 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR473LSX | float |
DNase-seq_ENCSR473LSX |
DNase-seq ENCSR473LSX [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
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[0.513, 91.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF541EUP.bed.gz | 371.69 KB | aceb3df13061549bdcc60e2aefdcda29 |
| ENCFF541EUP.bed.gz.dvc | 100.0 B | 067f7bfe8046b20671f07b076d3c123d |
| ENCFF541EUP.tabix.bed.gz | 334.53 KB | 9f2a5fef290b6a468b6a5f0c04e7fe78 |
| ENCFF541EUP.tabix.bed.gz.dvc | 106.0 B | 659bfe60db93954b6d4b1b3e3b57b763 |
| ENCFF541EUP.tabix.bed.gz.tbi | 184.22 KB | 913d926959f6b0bbbedae2b49b87104a |
| ENCFF541EUP.tabix.bed.gz.tbi.dvc | 110.0 B | fb387c880701283e1482b2c6e1623605 |
| genomic_resource.yaml | 1.79 KB | b955168c64b3d0bf1a6befeee21f399b |
| genomic_resource_original.yaml | 1.7 KB | 3e4fb5a3f1d881638e79da82f901794d |
| statistics/ |