| Id: | DNase-seq/ENCSR471RHG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR471RHG [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF164OKO|/files/ENCFF164OKO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30710976 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR471RHG | float |
DNase-seq_ENCSR471RHG |
DNase-seq ENCSR471RHG [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"]
|
 |
[0.326, 47.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF525BWN.bed.gz | 536.56 KB | 4f5d5a6f97b67ef281dbc8e7e1182e5f |
| ENCFF525BWN.bed.gz.dvc | 100.0 B | 378828c9ed80f34a813083c17ab5492b |
| ENCFF525BWN.tabix.bed.gz | 486.34 KB | ce7345752dfcb8541595551b8730a64d |
| ENCFF525BWN.tabix.bed.gz.dvc | 106.0 B | 245df418f06fd437c0157126f2555eb6 |
| ENCFF525BWN.tabix.bed.gz.tbi | 244.37 KB | 6b00cf1cc49c2bd56fa4fb4478b94af0 |
| ENCFF525BWN.tabix.bed.gz.tbi.dvc | 110.0 B | 9453d52171eabeb961490413f22ac89a |
| genomic_resource.yaml | 2.46 KB | cb6062c3dc7dcf03ef12d0812ac5331c |
| genomic_resource_original.yaml | 2.23 KB | 08d4d2a6e951ecca6087fd5764f4a0de |
| statistics/ |