| Id: | DNase-seq/ENCSR470QCE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR470QCE [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF566AHQ|/files/ENCFF566AHQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 33794602 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR470QCE | float |
DNase-seq_ENCSR470QCE |
DNase-seq ENCSR470QCE [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours"]
|
 |
[0.238, 30.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF401OFY.bed.gz | 367.04 KB | 775aaad601a0a74389bef7fdb72fc003 |
| ENCFF401OFY.bed.gz.dvc | 100.0 B | 3fe2980493a6bf4a6284baad0a8d3910 |
| ENCFF401OFY.tabix.bed.gz | 332.01 KB | 01feb54b6166e0a87fa1ccfa35a5d6ea |
| ENCFF401OFY.tabix.bed.gz.dvc | 106.0 B | 637e0ce43a0a47ef424c2dbf9d4bc026 |
| ENCFF401OFY.tabix.bed.gz.tbi | 186.89 KB | db067bcee41794e50b7e0a04b62583ac |
| ENCFF401OFY.tabix.bed.gz.tbi.dvc | 110.0 B | 01fe96bf00773f6e6b7e57ea77db6494 |
| genomic_resource.yaml | 2.78 KB | b05b78090c53cdab05aa89e7e70617e0 |
| genomic_resource_original.yaml | 2.5 KB | aaf1ad54a24770ca14b8e808760a344e |
| statistics/ |