Resource

Id DNase-seq/ENCSR467YCDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR467YCD [biosample_summary="Homo sapiens central memory CD4-positive, alpha-beta T cell"]
Description
Labels
  • accession: ENCSR467YCD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000904/
  • biosample_summary: Homo sapiens central memory CD4-positive, alpha-beta T cell
  • date_created: 2022-03-15T00:46:41.316430+00:00
  • date_released: 2022-05-25
  • doi: 10.17989/ENCSR467YCD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR467YCD float

DNase-seq_ENCSR467YCD

DNase-seq ENCSR467YCD [biosample_summary="Homo sapiens central memory CD4-positive, alpha-beta T cell"]
HISTOGRAM FOR DNase-seq_ENCSR467YCD [0.102, 69.4]
n
12,950,703
mean
4.88
sd
7.64

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 129507030.40% 64505
chr1 1286301 0.52% 6424
chr2 934177 0.39% 4641
chr3 746287 0.38% 3698
chr4 481796 0.25% 2404
chr5 613379 0.34% 3030
chr6 808303 0.47% 3964
chr7 610483 0.38% 3045
chr8 486831 0.34% 2480
chr9 507903 0.37% 2557
chr10 598915 0.45% 2970
chr11 647101 0.48% 3265
chr12 662460 0.50% 3306
chr13 293082 0.26% 1458
chr14 466858 0.44% 2332
chr15 409854 0.40% 2094
chr16 483813 0.54% 2409
chr17 736524 0.88% 3638
chr18 220296 0.27% 1104
chr19 731063 1.25% 3534
chr20 348388 0.54% 1758
chr21 157087 0.34% 778
chr22 291532 0.57% 1488
chrX 427734 0.27% 2124
chrY 536 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64505 5 880 200.77 200
global segment-length histogram

Files

Filename Size md5
ENCFF577WNP.bed.gz 723.65 KB f7f8a631fc3a4501d44b0e05e49faf01
ENCFF577WNP.tabix.bed.gz 665.16 KB f0d22dcf69e09a0e0427f287a6b2d745
ENCFF577WNP.tabix.bed.gz.tbi 274.13 KB bbee7eaca76131ba0ff65fb8fa79a364
genomic_resource.yaml 1.19 KB aa4e3f460f60e97678c78c56a443fd0d
statistics/