Resource

Id DNase-seq/ENCSR467MSPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR467MSP [biosample_summary="Homo sapiens T-cell female adult (23 years)"]
Description
Labels
  • accession: ENCSR467MSP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (23 years)
  • date_created: 2020-04-12T19:00:05.849069+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR467MSP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (23 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR467MSP float

DNase-seq_ENCSR467MSP

DNase-seq ENCSR467MSP [biosample_summary="Homo sapiens T-cell female adult (23 years)"]
HISTOGRAM FOR DNase-seq_ENCSR467MSP [0.143, 83.7]
n
10,037,480
mean
7.3
sd
10

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 100374800.31% 50541
chr1 1011086 0.41% 5064
chr2 697531 0.29% 3532
chr3 548796 0.28% 2789
chr4 344287 0.18% 1724
chr5 447068 0.25% 2252
chr6 587246 0.34% 2925
chr7 475492 0.30% 2411
chr8 370578 0.26% 1894
chr9 402475 0.29% 2035
chr10 447301 0.33% 2236
chr11 513287 0.38% 2602
chr12 516224 0.39% 2576
chr13 201428 0.18% 1007
chr14 353882 0.33% 1793
chr15 315205 0.31% 1623
chr16 413471 0.46% 2076
chr17 612552 0.74% 3060
chr18 161820 0.20% 825
chr19 649614 1.11% 3178
chr20 285754 0.44% 1473
chr21 128073 0.27% 634
chr22 248031 0.49% 1278
chrX 306279 0.20% 1554
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50541 3 980 198.6 200
global segment-length histogram

Files

Filename Size md5
ENCFF147CYP.bed.gz 564.69 KB a2756990f170d5228196a6e33194b4d9
ENCFF147CYP.tabix.bed.gz 514.58 KB 297361e79bc6e5aa0f072c1adc3384d1
ENCFF147CYP.tabix.bed.gz.tbi 240.16 KB 0d9ee972dc82c210fde9804302f54821
genomic_resource.yaml 1.19 KB a3fb04a8d214fdaf1d6bb144c50a0246
statistics/