| Id: | DNase-seq/ENCSR467LJT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR467LJT [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF252KIH|/files/ENCFF252KIH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 37827340 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR467LJT | float |
DNase-seq_ENCSR467LJT |
DNase-seq ENCSR467LJT [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour"]
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[0.265, 58.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF498TEW.bed.gz | 438.57 KB | 74286351b067838cfe847c78c815ff4d |
| ENCFF498TEW.bed.gz.dvc | 100.0 B | ae2024f40eeffb91832f6dfde36791fc |
| ENCFF498TEW.tabix.bed.gz | 398.25 KB | 3a2abc26a39775ecf425e45d45230b87 |
| ENCFF498TEW.tabix.bed.gz.dvc | 106.0 B | dcfcf9c125882279a98fe85c2579ea07 |
| ENCFF498TEW.tabix.bed.gz.tbi | 199.91 KB | 5df0a05ce71ae387b3dea2e38d86b0bd |
| ENCFF498TEW.tabix.bed.gz.tbi.dvc | 110.0 B | f110c751a889ba72c3383f50dc290225 |
| genomic_resource.yaml | 2.4 KB | 897a1c8957c371c78277bebc3b0f98d3 |
| genomic_resource_original.yaml | 2.18 KB | e6f28467fa470d92e72889586866701d |
| statistics/ |