Resource

Id DNase-seq/ENCSR467LJTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR467LJT [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour"]
Description
Labels
  • accession: ENCSR467LJT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour
  • date_created: 2020-04-19T18:36:54.023879+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR467LJT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR467LJT float

DNase-seq_ENCSR467LJT
DNase-seq ENCSR467LJT [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR467LJT [0.265, 58.5]
n
7,695,091
mean
6.72
sd
6.61

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 76950910.24% 39705
chr1 786696 0.32% 4073
chr2 517397 0.21% 2690
chr3 415879 0.21% 2116
chr4 267035 0.14% 1346
chr5 336407 0.19% 1722
chr6 442847 0.26% 2250
chr7 356175 0.22% 1852
chr8 274094 0.19% 1434
chr9 317912 0.23% 1649
chr10 340997 0.25% 1768
chr11 390429 0.29% 2035
chr12 404502 0.30% 2076
chr13 142920 0.12% 720
chr14 268982 0.25% 1381
chr15 258087 0.25% 1334
chr16 325876 0.36% 1696
chr17 465261 0.56% 2413
chr18 116739 0.15% 606
chr19 545581 0.93% 2755
chr20 218983 0.34% 1148
chr21 90499 0.19% 475
chr22 192368 0.38% 1009
chrX 213244 0.14% 1127
chrY 6181 0.01% 30
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39705 5 780 193.81 180
global segment-length histogram

Files

Filename Size md5
ENCFF498TEW.bed.gz 438.57 KB 74286351b067838cfe847c78c815ff4d
ENCFF498TEW.tabix.bed.gz 398.25 KB 3a2abc26a39775ecf425e45d45230b87
ENCFF498TEW.tabix.bed.gz.tbi 199.91 KB 5df0a05ce71ae387b3dea2e38d86b0bd
genomic_resource.yaml 2.4 KB 897a1c8957c371c78277bebc3b0f98d3
statistics/