| Id: | DNase-seq/ENCSR466SUZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR466SUZ [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF301BIC|/files/ENCFF301BIC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR466SUZ | float |
DNase-seq_ENCSR466SUZ |
DNase-seq ENCSR466SUZ [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"]
|
 |
[0.0816, 33] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF871OII.bed.gz | 751.44 KB | 731a944654907f2fc5b844f96a9d090f |
| ENCFF871OII.bed.gz.dvc | 100.0 B | eb215c65f903340c29c102636f141adc |
| ENCFF871OII.tabix.bed.gz | 694.39 KB | c9d07950fac4946b6c06acd87bc3c5fa |
| ENCFF871OII.tabix.bed.gz.dvc | 106.0 B | 05f8635a79cd406ec832e2576c34cd21 |
| ENCFF871OII.tabix.bed.gz.tbi | 294.1 KB | b5c0f147b937382f5a1b1fa436fe1e86 |
| ENCFF871OII.tabix.bed.gz.tbi.dvc | 110.0 B | 6e88dce3745cd76ff9ae23180f32ca0e |
| genomic_resource.yaml | 2.51 KB | 5db7b3c420ad938732eb79330395fc4d |
| genomic_resource_original.yaml | 2.32 KB | b5cf659b25c3175062118d940b14eb8d |
| statistics/ |