Resource

Id DNase-seq/ENCSR464TKVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR464TKV [biosample_summary="Homo sapiens body of pancreas tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR464TKV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001150/
  • biosample_summary: Homo sapiens body of pancreas tissue male adult (54 years)
  • date_created: 2019-07-29T20:41:32.834610+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR464TKV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR464TKV float

DNase-seq_ENCSR464TKV

DNase-seq ENCSR464TKV [biosample_summary="Homo sapiens body of pancreas tissue male adult (54 years)"]
HISTOGRAM FOR DNase-seq_ENCSR464TKV [0.0463, 50.2]
n
19,657,617
mean
3.05
sd
4.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 196576170.61% 101727
chr1 1903881 0.76% 9839
chr2 1462750 0.60% 7683
chr3 1063999 0.54% 5584
chr4 788275 0.41% 4109
chr5 885385 0.49% 4675
chr6 960252 0.56% 5011
chr7 1011022 0.63% 5231
chr8 862095 0.59% 4499
chr9 911761 0.66% 4659
chr10 1004988 0.75% 5185
chr11 1118810 0.83% 5703
chr12 876581 0.66% 4563
chr13 385053 0.34% 2023
chr14 678223 0.63% 3527
chr15 694308 0.68% 3549
chr16 778113 0.86% 4006
chr17 1061913 1.28% 5410
chr18 346408 0.43% 1845
chr19 943497 1.61% 4695
chr20 585716 0.91% 3037
chr21 251842 0.54% 1291
chr22 540502 1.06% 2746
chrX 520237 0.33% 2735
chrY 22006 0.04% 122
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101727 1 940 193.24 180
global segment-length histogram

Files

Filename Size md5
ENCFF171ZRD.bed.gz 1.1 MB 6363785fea947b2ab6a71843621a9a10
ENCFF171ZRD.tabix.bed.gz 1.01 MB 284e60ad99cc5fec12c0150477032f85
ENCFF171ZRD.tabix.bed.gz.tbi 363.74 KB b26fc80da7a236f3eccc42596a8a7827
genomic_resource.yaml 1.23 KB ff063b5a52dc73a45d6f6735c0019d80
statistics/