Resource

Id DNase-seq/ENCSR464ETXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR464ETX [biosample_summary="Homo sapiens CD14-positive monocyte male adult (21 years)"]
Description
Labels
  • accession: ENCSR464ETX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0001054/
  • biosample_summary: Homo sapiens CD14-positive monocyte male adult (21 years)
  • date_created: 2021-11-18T17:43:08.304680+00:00
  • date_released: 2022-06-07
  • doi: 10.17989/ENCSR464ETX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years)
  • status: released
  • submitter_comment: This dataset includes replicates and files that were previously associated with dataset ENCSR277ZHX.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR464ETX float

DNase-seq_ENCSR464ETX

DNase-seq ENCSR464ETX [biosample_summary="Homo sapiens CD14-positive monocyte male adult (21 years)"]
HISTOGRAM FOR DNase-seq_ENCSR464ETX [0.0448, 28.1]
n
22,924,988
mean
2.48
sd
2.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 229249880.71% 123890
chr1 2246656 0.90% 12171
chr2 1789960 0.74% 9744
chr3 1458675 0.74% 7900
chr4 932643 0.49% 5049
chr5 1165255 0.64% 6328
chr6 1398140 0.82% 7506
chr7 1074310 0.67% 5812
chr8 995729 0.69% 5385
chr9 941530 0.68% 5105
chr10 1100104 0.82% 5981
chr11 1125523 0.83% 6082
chr12 1215822 0.91% 6522
chr13 501748 0.44% 2723
chr14 735252 0.69% 3928
chr15 772590 0.76% 4153
chr16 784271 0.87% 4271
chr17 1139173 1.37% 6155
chr18 457106 0.57% 2471
chr19 1008019 1.72% 5289
chr20 658015 1.02% 3577
chr21 288651 0.62% 1560
chr22 459884 0.90% 2485
chrX 649885 0.42% 3545
chrY 26047 0.05% 148
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 123890 4 680 185.04 180
global segment-length histogram

Files

Filename Size md5
ENCFF087SET.bed.gz 1.34 MB 999196b414cd8a259b1c9ca4c1696874
ENCFF087SET.tabix.bed.gz 1.23 MB 9ab5c7d9a5cf7d6371c667c7d258b59c
ENCFF087SET.tabix.bed.gz.tbi 394.66 KB 8c20125f1976882b4552061645dce087
genomic_resource.yaml 1.33 KB 6bbd680262c3aecb0254333d3c78611e
statistics/