Resource

Id DNase-seq/ENCSR462XTMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR462XTM [biosample_summary="Homo sapiens sigmoid colon tissue female adult (51 years)"]
Description
Labels
  • accession: ENCSR462XTM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001159/
  • biosample_summary: Homo sapiens sigmoid colon tissue female adult (51 years)
  • date_created: 2016-12-27T20:17:36.510999+00:00
  • date_released: 2017-11-01
  • doi: 10.17989/ENCSR462XTM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR462XTM float

DNase-seq_ENCSR462XTM
DNase-seq ENCSR462XTM [biosample_summary="Homo sapiens sigmoid colon tissue female adult (51 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR462XTM [1, 7.86e+03]
n
27,805,544
mean
47.7
sd
56.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 278055440.86% 184551
chr1 2398869 0.96% 15925
chr2 2840278 1.17% 18843
chr3 1457441 0.73% 9676
chr4 757826 0.40% 5025
chr5 1470439 0.81% 9754
chr6 1384615 0.81% 9189
chr7 1263942 0.79% 8380
chr8 1336845 0.92% 8876
chr9 1201270 0.87% 7969
chr10 2003622 1.50% 13293
chr11 1453144 1.08% 9648
chr12 984779 0.74% 6536
chr13 703271 0.61% 4670
chr14 843754 0.79% 5598
chr15 1146470 1.12% 7619
chr16 929865 1.03% 6179
chr17 952365 1.14% 6329
chr18 837468 1.04% 5564
chr19 850683 1.45% 5645
chr20 968967 1.50% 6434
chr21 514315 1.10% 3412
chr22 683076 1.34% 4540
chrX 802318 0.51% 5313
chrY 19922 0.03% 134
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 184551 4 542 150.67 150
global segment-length histogram

Files

Filename Size md5
ENCFF006EIZ.bed.gz 1.63 MB 869f4170d6f6fee9ac6349a15a2ef9db
ENCFF006EIZ.tabix.bed.gz 1.41 MB e2a6b2d586b70d569979aa80f2754fc8
ENCFF006EIZ.tabix.bed.gz.tbi 276.73 KB 95b300a8c4e52c7cc61f25dd9dfdef5f
genomic_resource.yaml 1.4 KB b834a0b11a1f0a8b85e383cafa071f00
statistics/