Resource

Id DNase-seq/ENCSR458LIBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR458LIB [biosample_summary="Homo sapiens MM.1S"]
Description
Labels
  • accession: ENCSR458LIB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005724/
  • biosample_summary: Homo sapiens MM.1S
  • date_created: 2014-09-26T06:21:17.167519+00:00
  • date_released: 2015-11-05
  • doi: 10.17989/ENCSR458LIB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR458LIB float

DNase-seq_ENCSR458LIB
DNase-seq ENCSR458LIB [biosample_summary="Homo sapiens MM.1S"]
 HISTOGRAM FOR DNase-seq_ENCSR458LIB [2, 5.94e+05]
n
28,232,692
mean
343
sd
1.74e+03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 282326920.88% 188052
chr1 2837928 1.14% 18904
chr2 2292024 0.95% 15265
chr3 1995033 1.01% 13283
chr4 1530346 0.80% 10196
chr5 1627831 0.90% 10844
chr6 1603366 0.94% 10685
chr7 1627164 1.02% 10830
chr8 1215869 0.84% 8100
chr9 1120108 0.81% 7464
chr10 1253945 0.94% 8352
chr11 1386527 1.03% 9231
chr12 1360216 1.02% 9060
chr13 678551 0.59% 4522
chr14 719476 0.67% 4791
chr15 920037 0.90% 6125
chr16 829476 0.92% 5523
chr17 1126778 1.35% 7508
chr18 620230 0.77% 4133
chr19 857461 1.46% 5716
chr20 729434 1.13% 4860
chr21 371743 0.80% 2475
chr22 503618 0.99% 3358
chrX 995081 0.64% 6624
chrY 30450 0.05% 203
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 188052 3 300 150.13 150
global segment-length histogram

Files

Filename Size md5
ENCFF742USA.bed.gz 1.83 MB 183b2e93aa19499f10bd9bc617d2b32e
ENCFF742USA.tabix.bed.gz 1.58 MB 37a59eda8a03909a240fa0fb640c73d2
ENCFF742USA.tabix.bed.gz.tbi 611.13 KB 13b0d2a244caa74e54b23edc8cf778c2
genomic_resource.yaml 1.25 KB 05760dca24e822696cd59900b6e0fae9
statistics/