DNase-seq_ENCSR457RVC
DNase-seq ENCSR457RVC [biosample_summary="Homo sapiens T-cell male adult (28 years)"]
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| Id: | DNase-seq/ENCSR457RVC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR457RVC [biosample_summary="Homo sapiens T-cell male adult (28 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (28 years) output_type: peaks audit_warning: Alignment file {ENCFF787OWI|/files/ENCFF787OWI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 35928898 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR457RVC | float |
DNase-seq_ENCSR457RVC |
DNase-seq ENCSR457RVC [biosample_summary="Homo sapiens T-cell male adult (28 years)"]
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[0.279, 132] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF188HUC.bed.gz | 488.21 KB | 0679bd51e8de9c3aa3840a36703d9cd1 |
| ENCFF188HUC.bed.gz.dvc | 100.0 B | cbc1190f69f45d282f407e6b99b88737 |
| ENCFF188HUC.tabix.bed.gz | 440.27 KB | 44d80a622acd7d3cabb783b05c76edde |
| ENCFF188HUC.tabix.bed.gz.dvc | 106.0 B | d0a9b4dcf2fcc8cffcfc96fef7d7438c |
| ENCFF188HUC.tabix.bed.gz.tbi | 222.49 KB | f10efb2fa02da8107c4d828fe12da683 |
| ENCFF188HUC.tabix.bed.gz.tbi.dvc | 110.0 B | 6471f2e1ee083171db684ca0cec82371 |
| genomic_resource.yaml | 1.79 KB | 3858ae53a187050cb8ee0f73f391472c |
| genomic_resource_original.yaml | 1.7 KB | 936222e7485a9db4b0b5dd4c314608a6 |
| statistics/ |